Warning: Permanently added '54.164.46.0' (ECDSA) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 1297528 --chroot fedora-rawhide-i386 --detached Version: 0.37 Task: {'build_id': 1297528, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-i386', 'enable_net': True, 'fetch_sources_only': True, 'git_hash': 'be3e74509035237d6c82ada2fabbd1518aa5f460', 'git_repo': 'junghans/gromacs/gromacs', 'memory_reqs': 2048, 'package_name': 'gromacs', 'package_version': '2020.1-1.fc31', 'project_dirname': 'gromacs', 'project_name': 'gromacs', 'project_owner': 'junghans', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/junghans/gromacs/fedora-rawhide-i386/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'junghans/gromacs--junghans', 'source_json': {'clone_url': 'https://copr-dist-git.fedorainfracloud.org/git/junghans/gromacs/gromacs.git', 'committish': 'be3e74509035237d6c82ada2fabbd1518aa5f460'}, 'source_type': 8, 'submitter': 'junghans', 'task_id': '1297528-fedora-rawhide-i386', 'timeout': 86400, 'use_bootstrap_container': False, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/junghans/gromacs/gromacs.git /tmp/copr-rpmbuild-ioa0baap/obtain-sources/gromacs --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/junghans/gromacs/gromacs.git', '/tmp/copr-rpmbuild-ioa0baap/obtain-sources/gromacs', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/tmp/copr-rpmbuild-ioa0baap/obtain-sources/gromacs'... Running: git checkout be3e74509035237d6c82ada2fabbd1518aa5f460 cmd: ['git', 'checkout', 'be3e74509035237d6c82ada2fabbd1518aa5f460'] cwd: /tmp/copr-rpmbuild-ioa0baap/obtain-sources/gromacs rc: 0 stdout: stderr: Note: switching to 'be3e74509035237d6c82ada2fabbd1518aa5f460'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at be3e745 automatic import of gromacs Running: cp -r . /tmp/copr-rpmbuild-ioa0baap cmd: ['cp', '-r', '.', '/tmp/copr-rpmbuild-ioa0baap'] cwd: /tmp/copr-rpmbuild-ioa0baap/obtain-sources/gromacs rc: 0 stdout: stderr: Generated rpkg config: [rpkg] preprocess_spec = True # auto-packing is deprecated: auto_pack = True [git] lookaside = https://copr-dist-git.fedorainfracloud.org/repo/pkgs/%(ns2)s/%(ns1)s/%(name)s/%(filename)s/%(hashtype)s/%(hash)s/%(filename)s anongiturl = https://copr-dist-git.fedorainfracloud.org/git/%(module)s Writing config into /tmp/copr-rpmbuild-ioa0baap/obtain-sources/.config/rpkg.conf Running: rpkg -C /tmp/copr-rpmbuild-ioa0baap/obtain-sources/.config/rpkg.conf sources --outdir /tmp/copr-rpmbuild-ioa0baap /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stdout: Downloading gromacs-2020.1.tar.gz from lookaside cache at copr-dist-git.fedorainfracloud.org Downloading manual-2020.1.pdf from lookaside cache at copr-dist-git.fedorainfracloud.org Downloading regressiontests-2020.1.tar.gz from lookaside cache at copr-dist-git.fedorainfracloud.org stderr: Running (timeout=86400): unbuffer mock --buildsrpm --spec /tmp/copr-rpmbuild-ioa0baap/gromacs.spec --sources /tmp/copr-rpmbuild-ioa0baap --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1583623683.813073 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.0 starting (python version = 3.7.6)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/tmp/copr-rpmbuild-ioa0baap/gromacs.spec) Config(1297528-fedora-rawhide-i386) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/1297528-fedora-rawhide-i386-1583623683.813073/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.0 INFO: Mock Version: 2.0 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk Copr repository 9.0 kB/s | 1.6 kB 00:00 local 16 MB/s | 56 MB 00:03 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash i686 5.0.11-2.fc32 local 1.6 M bzip2 i686 1.0.8-2.fc32 local 53 k coreutils i686 8.31-10.fc32 local 1.3 M cpio i686 2.13-4.fc32 local 290 k diffutils i686 3.7-4.fc32 local 407 k fedora-release noarch 33-0.1 local 12 k findutils i686 1:4.7.0-3.fc32 local 569 k gawk i686 5.0.1-7.fc32 local 1.2 M glibc-minimal-langpack i686 2.31.9000-3.fc33 local 68 k grep i686 3.3-4.fc32 local 257 k gzip i686 1.10-2.fc32 local 156 k info i686 6.7-6.fc33 local 236 k make i686 1:4.2.1-16.fc32 local 504 k patch i686 2.7.6-12.fc32 local 149 k redhat-rpm-config noarch 153-1.fc33 local 64 k rpm-build i686 4.15.1-2.fc32.1 local 117 k sed i686 4.8-1.fc33 local 307 k shadow-utils i686 2:4.8-4.fc33 local 1.2 M tar i686 2:1.32-4.fc32 local 914 k unzip i686 6.0-47.fc32 local 181 k util-linux i686 2.35.1-5.fc33 local 2.7 M which i686 2.21-17.fc32 local 43 k xz i686 5.2.4-8.fc32 local 166 k Installing dependencies: alternatives i686 1.11-6.fc32 local 36 k audit-libs i686 3.0-0.18.20191104git1c2f876.fc32 local 121 k basesystem noarch 11-9.fc32 local 6.8 k binutils i686 2.34-2.fc33 local 5.6 M binutils-gold i686 2.34-2.fc33 local 948 k bzip2-libs i686 1.0.8-2.fc32 local 40 k ca-certificates noarch 2020.2.40-3.fc32 local 358 k coreutils-common i686 8.31-10.fc32 local 1.9 M cracklib i686 2.9.6-22.fc32 local 83 k crypto-policies noarch 20191128-5.gitcd267a5.fc32 local 56 k curl i686 7.69.0-1.fc33 local 296 k cyrus-sasl-lib i686 2.1.27-3.fc32 local 107 k dwz i686 0.13-2.fc32 local 114 k efi-srpm-macros noarch 4-4.fc32 local 22 k elfutils i686 0.178-9.fc32 local 547 k elfutils-default-yama-scope noarch 0.178-9.fc32 local 17 k elfutils-libelf i686 0.178-9.fc32 local 198 k elfutils-libs i686 0.178-9.fc32 local 302 k expat i686 2.2.8-2.fc32 local 106 k fedora-gpg-keys noarch 33-0.3 local 103 k fedora-release-common noarch 33-0.1 local 20 k fedora-repos noarch 33-0.3 local 9.9 k fedora-repos-rawhide noarch 33-0.3 local 9.1 k file i686 5.38-2.fc32 local 52 k file-libs i686 5.38-2.fc32 local 575 k filesystem i686 3.14-2.fc32 local 1.1 M fonts-srpm-macros noarch 2.0.3-1.fc33 local 26 k fpc-srpm-macros noarch 1.3-1.fc32 local 7.6 k gc i686 8.0.4-3.fc32 local 116 k gdb-minimal i686 9.1-4.fc33 local 3.8 M ghc-srpm-macros noarch 1.5.0-2.fc32 local 7.7 k glibc i686 2.31.9000-3.fc33 local 3.4 M glibc-common i686 2.31.9000-3.fc33 local 1.8 M gmp i686 1:6.2.0-1.fc33 local 310 k gnat-srpm-macros noarch 4-11.fc32 local 8.2 k go-srpm-macros noarch 3.0.8-5.fc32 local 25 k guile22 i686 2.2.6-4.fc32 local 6.7 M keyutils-libs i686 1.6-4.fc32 local 32 k krb5-libs i686 1.18-5.fc33 local 812 k libacl i686 2.2.53-5.fc32 local 26 k libarchive i686 3.4.2-1.fc33 local 433 k libattr i686 2.4.48-8.fc32 local 19 k libblkid i686 2.35.1-5.fc33 local 167 k libbrotli i686 1.0.7-10.fc32 local 326 k libcap i686 2.26-7.fc32 local 53 k libcap-ng i686 0.7.10-2.fc32 local 28 k libcom_err i686 1.45.5-3.fc32 local 28 k libcurl i686 7.69.0-1.fc33 local 301 k libdb i686 5.3.28-40.fc32 local 832 k libdb-utils i686 5.3.28-40.fc32 local 149 k libfdisk i686 2.35.1-5.fc33 local 223 k libffi i686 3.1-24.fc32 local 32 k libgcc i686 10.0.1-0.8.fc33 local 89 k libgcrypt i686 1.8.5-3.fc32 local 449 k libgomp i686 10.0.1-0.8.fc33 local 247 k libgpg-error i686 1.37-1.fc33 local 211 k libidn2 i686 2.3.0-2.fc32 local 105 k libmetalink i686 0.1.3-10.fc32 local 33 k libmount i686 2.35.1-5.fc33 local 192 k libnghttp2 i686 1.40.0-2.fc32 local 88 k libnsl2 i686 1.2.0-6.20180605git4a062cf.fc32 local 62 k libpkgconf i686 1.6.3-3.fc32 local 38 k libpsl i686 0.21.0-4.fc32 local 62 k libpwquality i686 1.4.2-2.fc32 local 102 k libselinux i686 3.0-4.fc33 local 90 k libsemanage i686 3.0-3.fc32 local 134 k libsepol i686 3.0-3.fc32 local 328 k libsigsegv i686 2.11-10.fc32 local 26 k libsmartcols i686 2.35.1-5.fc33 local 127 k libssh i686 0.9.3-2.fc32 local 232 k libssh-config noarch 0.9.3-2.fc32 local 11 k libstdc++ i686 10.0.1-0.8.fc33 local 650 k libtasn1 i686 4.16.0-1.fc32 local 76 k libtirpc i686 1.2.5-1.rc2.fc33 local 106 k libtool-ltdl i686 2.4.6-33.fc32 local 38 k libunistring i686 0.9.10-7.fc32 local 523 k libutempter i686 1.1.6-18.fc32 local 26 k libuuid i686 2.35.1-5.fc33 local 29 k libverto i686 0.3.0-9.fc32 local 22 k libxcrypt i686 4.4.15-1.fc33 local 133 k libxml2 i686 2.9.10-4.fc33 local 747 k libzstd i686 1.4.4-2.fc32 local 259 k lua-libs i686 5.3.5-7.fc32 local 134 k lz4-libs i686 1.9.1-2.fc32 local 68 k mpfr i686 4.0.2-3.fc32 local 263 k ncurses i686 6.2-1.20200222.fc33 local 397 k ncurses-base noarch 6.2-1.20200222.fc33 local 59 k ncurses-libs i686 6.2-1.20200222.fc33 local 347 k nim-srpm-macros noarch 3-2.fc32 local 8.3 k ocaml-srpm-macros noarch 6-2.fc32 local 7.7 k openblas-srpm-macros noarch 2-7.fc32 local 7.2 k openldap i686 2.4.47-4.fc32 local 323 k openssl-libs i686 1:1.1.1d-7.fc33 local 1.4 M p11-kit i686 0.23.20-1.fc32 local 345 k p11-kit-trust i686 0.23.20-1.fc32 local 143 k pam i686 1.3.1-23.fc33 local 688 k pcre i686 8.44-1.fc33 local 197 k pcre2 i686 10.34-7.fc33 local 267 k perl-srpm-macros noarch 1-34.fc32 local 8.3 k pkgconf i686 1.6.3-3.fc32 local 41 k pkgconf-m4 noarch 1.6.3-3.fc32 local 14 k pkgconf-pkg-config i686 1.6.3-3.fc32 local 9.7 k popt i686 1.16-19.fc32 local 61 k publicsuffix-list-dafsa noarch 20190417-3.fc32 local 56 k python-srpm-macros noarch 3-54.fc32 local 17 k qt5-srpm-macros noarch 5.13.2-2.fc32 local 8.5 k readline i686 8.0-4.fc32 local 210 k rpm i686 4.15.1-2.fc32.1 local 497 k rpm-build-libs i686 4.15.1-2.fc32.1 local 105 k rpm-libs i686 4.15.1-2.fc32.1 local 329 k rust-srpm-macros noarch 13-2.fc33 local 9.5 k setup noarch 2.13.6-2.fc32 local 142 k systemd-libs i686 245-1.fc33 local 591 k tzdata noarch 2019c-3.fc32 local 429 k xxhash-libs i686 0.7.3-1.fc33 local 36 k xz-libs i686 5.2.4-8.fc32 local 98 k zip i686 3.0-26.fc32 local 268 k zlib i686 1.2.11-21.fc32 local 96 k zstd i686 1.4.4-2.fc32 local 393 k Installing Groups: build Transaction Summary ================================================================================ Install 142 Packages Total download size: 58 M Installed size: 223 M Downloading Packages: (1/142): basesystem-11-9.fc32.noarch.rpm 30 kB/s | 6.8 kB 00:00 (2/142): alternatives-1.11-6.fc32.i686.rpm 126 kB/s | 36 kB 00:00 (3/142): audit-libs-3.0-0.18.20191104git1c2f876 250 kB/s | 121 kB 00:00 (4/142): binutils-2.34-2.fc33.i686.rpm 4.1 MB/s | 5.6 MB 00:01 (5/142): bzip2-1.0.8-2.fc32.i686.rpm 762 kB/s | 53 kB 00:00 (6/142): bzip2-libs-1.0.8-2.fc32.i686.rpm 575 kB/s | 40 kB 00:00 (7/142): ca-certificates-2020.2.40-3.fc32.noarc 4.2 MB/s | 358 kB 00:00 (8/142): binutils-gold-2.34-2.fc33.i686.rpm 648 kB/s | 948 kB 00:01 (9/142): coreutils-8.31-10.fc32.i686.rpm 11 MB/s | 1.3 MB 00:00 (10/142): cpio-2.13-4.fc32.i686.rpm 3.5 MB/s | 290 kB 00:00 (11/142): cracklib-2.9.6-22.fc32.i686.rpm 1.1 MB/s | 83 kB 00:00 (12/142): crypto-policies-20191128-5.gitcd267a5 763 kB/s | 56 kB 00:00 (13/142): curl-7.69.0-1.fc33.i686.rpm 3.6 MB/s | 296 kB 00:00 (14/142): cyrus-sasl-lib-2.1.27-3.fc32.i686.rpm 1.3 MB/s | 107 kB 00:00 (15/142): diffutils-3.7-4.fc32.i686.rpm 4.4 MB/s | 407 kB 00:00 (16/142): bash-5.0.11-2.fc32.i686.rpm 740 kB/s | 1.6 MB 00:02 (17/142): dwz-0.13-2.fc32.i686.rpm 1.3 MB/s | 114 kB 00:00 (18/142): efi-srpm-macros-4-4.fc32.noarch.rpm 296 kB/s | 22 kB 00:00 (19/142): elfutils-default-yama-scope-0.178-9.f 247 kB/s | 17 kB 00:00 (20/142): elfutils-0.178-9.fc32.i686.rpm 6.1 MB/s | 547 kB 00:00 (21/142): elfutils-libelf-0.178-9.fc32.i686.rpm 2.5 MB/s | 198 kB 00:00 (22/142): elfutils-libs-0.178-9.fc32.i686.rpm 3.6 MB/s | 302 kB 00:00 (23/142): expat-2.2.8-2.fc32.i686.rpm 1.4 MB/s | 106 kB 00:00 (24/142): fedora-gpg-keys-33-0.3.noarch.rpm 1.4 MB/s | 103 kB 00:00 (25/142): fedora-release-33-0.1.noarch.rpm 151 kB/s | 12 kB 00:00 (26/142): fedora-release-common-33-0.1.noarch.r 288 kB/s | 20 kB 00:00 (27/142): fedora-repos-33-0.3.noarch.rpm 144 kB/s | 9.9 kB 00:00 (28/142): fedora-repos-rawhide-33-0.3.noarch.rp 133 kB/s | 9.1 kB 00:00 (29/142): file-5.38-2.fc32.i686.rpm 690 kB/s | 52 kB 00:00 (30/142): file-libs-5.38-2.fc32.i686.rpm 6.1 MB/s | 575 kB 00:00 (31/142): findutils-4.7.0-3.fc32.i686.rpm 6.2 MB/s | 569 kB 00:00 (32/142): filesystem-3.14-2.fc32.i686.rpm 6.8 MB/s | 1.1 MB 00:00 (33/142): fonts-srpm-macros-2.0.3-1.fc33.noarch 371 kB/s | 26 kB 00:00 (34/142): fpc-srpm-macros-1.3-1.fc32.noarch.rpm 105 kB/s | 7.6 kB 00:00 (35/142): coreutils-common-8.31-10.fc32.i686.rp 1.4 MB/s | 1.9 MB 00:01 (36/142): gawk-5.0.1-7.fc32.i686.rpm 9.3 MB/s | 1.2 MB 00:00 (37/142): gc-8.0.4-3.fc32.i686.rpm 1.4 MB/s | 116 kB 00:00 (38/142): ghc-srpm-macros-1.5.0-2.fc32.noarch.r 99 kB/s | 7.7 kB 00:00 (39/142): gdb-minimal-9.1-4.fc33.i686.rpm 13 MB/s | 3.8 MB 00:00 (40/142): glibc-common-2.31.9000-3.fc33.i686.rp 7.9 MB/s | 1.8 MB 00:00 (41/142): glibc-2.31.9000-3.fc33.i686.rpm 10 MB/s | 3.4 MB 00:00 (42/142): glibc-minimal-langpack-2.31.9000-3.fc 917 kB/s | 68 kB 00:00 (43/142): gmp-6.2.0-1.fc33.i686.rpm 3.8 MB/s | 310 kB 00:00 (44/142): gnat-srpm-macros-4-11.fc32.noarch.rpm 116 kB/s | 8.2 kB 00:00 (45/142): go-srpm-macros-3.0.8-5.fc32.noarch.rp 309 kB/s | 25 kB 00:00 (46/142): grep-3.3-4.fc32.i686.rpm 3.1 MB/s | 257 kB 00:00 (47/142): info-6.7-6.fc33.i686.rpm 1.9 MB/s | 236 kB 00:00 (48/142): gzip-1.10-2.fc32.i686.rpm 979 kB/s | 156 kB 00:00 (49/142): keyutils-libs-1.6-4.fc32.i686.rpm 440 kB/s | 32 kB 00:00 (50/142): krb5-libs-1.18-5.fc33.i686.rpm 7.2 MB/s | 812 kB 00:00 (51/142): libacl-2.2.53-5.fc32.i686.rpm 384 kB/s | 26 kB 00:00 (52/142): guile22-2.2.6-4.fc32.i686.rpm 17 MB/s | 6.7 MB 00:00 (53/142): libattr-2.4.48-8.fc32.i686.rpm 259 kB/s | 19 kB 00:00 (54/142): libarchive-3.4.2-1.fc33.i686.rpm 3.9 MB/s | 433 kB 00:00 (55/142): libblkid-2.35.1-5.fc33.i686.rpm 2.1 MB/s | 167 kB 00:00 (56/142): libbrotli-1.0.7-10.fc32.i686.rpm 3.8 MB/s | 326 kB 00:00 (57/142): libcap-2.26-7.fc32.i686.rpm 698 kB/s | 53 kB 00:00 (58/142): libcap-ng-0.7.10-2.fc32.i686.rpm 394 kB/s | 28 kB 00:00 (59/142): libcom_err-1.45.5-3.fc32.i686.rpm 395 kB/s | 28 kB 00:00 (60/142): libcurl-7.69.0-1.fc33.i686.rpm 3.6 MB/s | 301 kB 00:00 (61/142): libdb-utils-5.3.28-40.fc32.i686.rpm 1.9 MB/s | 149 kB 00:00 (62/142): libdb-5.3.28-40.fc32.i686.rpm 7.5 MB/s | 832 kB 00:00 (63/142): libfdisk-2.35.1-5.fc33.i686.rpm 2.5 MB/s | 223 kB 00:00 (64/142): libffi-3.1-24.fc32.i686.rpm 453 kB/s | 32 kB 00:00 (65/142): libgcc-10.0.1-0.8.fc33.i686.rpm 1.2 MB/s | 89 kB 00:00 (66/142): libgcrypt-1.8.5-3.fc32.i686.rpm 4.9 MB/s | 449 kB 00:00 (67/142): libgomp-10.0.1-0.8.fc33.i686.rpm 3.2 MB/s | 247 kB 00:00 (68/142): libgpg-error-1.37-1.fc33.i686.rpm 2.5 MB/s | 211 kB 00:00 (69/142): libidn2-2.3.0-2.fc32.i686.rpm 1.3 MB/s | 105 kB 00:00 (70/142): libmetalink-0.1.3-10.fc32.i686.rpm 457 kB/s | 33 kB 00:00 (71/142): libmount-2.35.1-5.fc33.i686.rpm 2.5 MB/s | 192 kB 00:00 (72/142): libnghttp2-1.40.0-2.fc32.i686.rpm 1.0 MB/s | 88 kB 00:00 (73/142): libnsl2-1.2.0-6.20180605git4a062cf.fc 828 kB/s | 62 kB 00:00 (74/142): libpkgconf-1.6.3-3.fc32.i686.rpm 530 kB/s | 38 kB 00:00 (75/142): libpsl-0.21.0-4.fc32.i686.rpm 774 kB/s | 62 kB 00:00 (76/142): libpwquality-1.4.2-2.fc32.i686.rpm 1.3 MB/s | 102 kB 00:00 (77/142): libselinux-3.0-4.fc33.i686.rpm 1.2 MB/s | 90 kB 00:00 (78/142): libsemanage-3.0-3.fc32.i686.rpm 1.7 MB/s | 134 kB 00:00 (79/142): libsepol-3.0-3.fc32.i686.rpm 4.1 MB/s | 328 kB 00:00 (80/142): libsigsegv-2.11-10.fc32.i686.rpm 372 kB/s | 26 kB 00:00 (81/142): libsmartcols-2.35.1-5.fc33.i686.rpm 1.7 MB/s | 127 kB 00:00 (82/142): libssh-0.9.3-2.fc32.i686.rpm 3.0 MB/s | 232 kB 00:00 (83/142): libssh-config-0.9.3-2.fc32.noarch.rpm 157 kB/s | 11 kB 00:00 (84/142): libstdc++-10.0.1-0.8.fc33.i686.rpm 7.0 MB/s | 650 kB 00:00 (85/142): libtasn1-4.16.0-1.fc32.i686.rpm 1.0 MB/s | 76 kB 00:00 (86/142): libtirpc-1.2.5-1.rc2.fc33.i686.rpm 1.3 MB/s | 106 kB 00:00 (87/142): libtool-ltdl-2.4.6-33.fc32.i686.rpm 381 kB/s | 38 kB 00:00 (88/142): libutempter-1.1.6-18.fc32.i686.rpm 332 kB/s | 26 kB 00:00 (89/142): libunistring-0.9.10-7.fc32.i686.rpm 4.6 MB/s | 523 kB 00:00 (90/142): libuuid-2.35.1-5.fc33.i686.rpm 410 kB/s | 29 kB 00:00 (91/142): libverto-0.3.0-9.fc32.i686.rpm 306 kB/s | 22 kB 00:00 (92/142): libxcrypt-4.4.15-1.fc33.i686.rpm 1.8 MB/s | 133 kB 00:00 (93/142): libzstd-1.4.4-2.fc32.i686.rpm 3.1 MB/s | 259 kB 00:00 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Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.14-2.fc32.i686 1/1 Preparing : 1/1 Installing : tzdata-2019c-3.fc32.noarch 1/142 Installing : rust-srpm-macros-13-2.fc33.noarch 2/142 Installing : qt5-srpm-macros-5.13.2-2.fc32.noarch 3/142 Installing : publicsuffix-list-dafsa-20190417-3.fc32.noarch 4/142 Installing : pkgconf-m4-1.6.3-3.fc32.noarch 5/142 Installing : perl-srpm-macros-1-34.fc32.noarch 6/142 Installing : openblas-srpm-macros-2-7.fc32.noarch 7/142 Installing : ocaml-srpm-macros-6-2.fc32.noarch 8/142 Installing : nim-srpm-macros-3-2.fc32.noarch 9/142 Installing : ncurses-base-6.2-1.20200222.fc33.noarch 10/142 Installing : libssh-config-0.9.3-2.fc32.noarch 11/142 Installing : gnat-srpm-macros-4-11.fc32.noarch 12/142 Installing : ghc-srpm-macros-1.5.0-2.fc32.noarch 13/142 Installing : fpc-srpm-macros-1.3-1.fc32.noarch 14/142 Installing : fedora-gpg-keys-33-0.3.noarch 15/142 Installing : fedora-release-33-0.1.noarch 16/142 Installing : fedora-release-common-33-0.1.noarch 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crypto-policies-20191128-5.gitcd267a5.fc32.noarc 14/142 Verifying : curl-7.69.0-1.fc33.i686 15/142 Verifying : cyrus-sasl-lib-2.1.27-3.fc32.i686 16/142 Verifying : diffutils-3.7-4.fc32.i686 17/142 Verifying : dwz-0.13-2.fc32.i686 18/142 Verifying : efi-srpm-macros-4-4.fc32.noarch 19/142 Verifying : elfutils-0.178-9.fc32.i686 20/142 Verifying : elfutils-default-yama-scope-0.178-9.fc32.noarch 21/142 Verifying : elfutils-libelf-0.178-9.fc32.i686 22/142 Verifying : elfutils-libs-0.178-9.fc32.i686 23/142 Verifying : expat-2.2.8-2.fc32.i686 24/142 Verifying : fedora-gpg-keys-33-0.3.noarch 25/142 Verifying : fedora-release-33-0.1.noarch 26/142 Verifying : fedora-release-common-33-0.1.noarch 27/142 Verifying : fedora-repos-33-0.3.noarch 28/142 Verifying : fedora-repos-rawhide-33-0.3.noarch 29/142 Verifying : file-5.38-2.fc32.i686 30/142 Verifying : file-libs-5.38-2.fc32.i686 31/142 Verifying : filesystem-3.14-2.fc32.i686 32/142 Verifying : findutils-1:4.7.0-3.fc32.i686 33/142 Verifying : fonts-srpm-macros-2.0.3-1.fc33.noarch 34/142 Verifying : fpc-srpm-macros-1.3-1.fc32.noarch 35/142 Verifying : gawk-5.0.1-7.fc32.i686 36/142 Verifying : gc-8.0.4-3.fc32.i686 37/142 Verifying : gdb-minimal-9.1-4.fc33.i686 38/142 Verifying : ghc-srpm-macros-1.5.0-2.fc32.noarch 39/142 Verifying : glibc-2.31.9000-3.fc33.i686 40/142 Verifying : glibc-common-2.31.9000-3.fc33.i686 41/142 Verifying : glibc-minimal-langpack-2.31.9000-3.fc33.i686 42/142 Verifying : gmp-1:6.2.0-1.fc33.i686 43/142 Verifying : gnat-srpm-macros-4-11.fc32.noarch 44/142 Verifying : go-srpm-macros-3.0.8-5.fc32.noarch 45/142 Verifying : grep-3.3-4.fc32.i686 46/142 Verifying : guile22-2.2.6-4.fc32.i686 47/142 Verifying : gzip-1.10-2.fc32.i686 48/142 Verifying : info-6.7-6.fc33.i686 49/142 Verifying : keyutils-libs-1.6-4.fc32.i686 50/142 Verifying : krb5-libs-1.18-5.fc33.i686 51/142 Verifying : libacl-2.2.53-5.fc32.i686 52/142 Verifying : libarchive-3.4.2-1.fc33.i686 53/142 Verifying : libattr-2.4.48-8.fc32.i686 54/142 Verifying : libblkid-2.35.1-5.fc33.i686 55/142 Verifying : libbrotli-1.0.7-10.fc32.i686 56/142 Verifying : libcap-2.26-7.fc32.i686 57/142 Verifying : libcap-ng-0.7.10-2.fc32.i686 58/142 Verifying : libcom_err-1.45.5-3.fc32.i686 59/142 Verifying : libcurl-7.69.0-1.fc33.i686 60/142 Verifying : libdb-5.3.28-40.fc32.i686 61/142 Verifying : libdb-utils-5.3.28-40.fc32.i686 62/142 Verifying : libfdisk-2.35.1-5.fc33.i686 63/142 Verifying : libffi-3.1-24.fc32.i686 64/142 Verifying : libgcc-10.0.1-0.8.fc33.i686 65/142 Verifying : libgcrypt-1.8.5-3.fc32.i686 66/142 Verifying : libgomp-10.0.1-0.8.fc33.i686 67/142 Verifying : libgpg-error-1.37-1.fc33.i686 68/142 Verifying : libidn2-2.3.0-2.fc32.i686 69/142 Verifying : libmetalink-0.1.3-10.fc32.i686 70/142 Verifying : libmount-2.35.1-5.fc33.i686 71/142 Verifying : libnghttp2-1.40.0-2.fc32.i686 72/142 Verifying : libnsl2-1.2.0-6.20180605git4a062cf.fc32.i686 73/142 Verifying : libpkgconf-1.6.3-3.fc32.i686 74/142 Verifying : libpsl-0.21.0-4.fc32.i686 75/142 Verifying : libpwquality-1.4.2-2.fc32.i686 76/142 Verifying : libselinux-3.0-4.fc33.i686 77/142 Verifying : libsemanage-3.0-3.fc32.i686 78/142 Verifying : libsepol-3.0-3.fc32.i686 79/142 Verifying : libsigsegv-2.11-10.fc32.i686 80/142 Verifying : libsmartcols-2.35.1-5.fc33.i686 81/142 Verifying : libssh-0.9.3-2.fc32.i686 82/142 Verifying : libssh-config-0.9.3-2.fc32.noarch 83/142 Verifying : libstdc++-10.0.1-0.8.fc33.i686 84/142 Verifying : libtasn1-4.16.0-1.fc32.i686 85/142 Verifying : libtirpc-1.2.5-1.rc2.fc33.i686 86/142 Verifying : libtool-ltdl-2.4.6-33.fc32.i686 87/142 Verifying : libunistring-0.9.10-7.fc32.i686 88/142 Verifying : libutempter-1.1.6-18.fc32.i686 89/142 Verifying : libuuid-2.35.1-5.fc33.i686 90/142 Verifying : libverto-0.3.0-9.fc32.i686 91/142 Verifying : libxcrypt-4.4.15-1.fc33.i686 92/142 Verifying : libxml2-2.9.10-4.fc33.i686 93/142 Verifying : libzstd-1.4.4-2.fc32.i686 94/142 Verifying : lua-libs-5.3.5-7.fc32.i686 95/142 Verifying : lz4-libs-1.9.1-2.fc32.i686 96/142 Verifying : make-1:4.2.1-16.fc32.i686 97/142 Verifying : mpfr-4.0.2-3.fc32.i686 98/142 Verifying : ncurses-6.2-1.20200222.fc33.i686 99/142 Verifying : ncurses-base-6.2-1.20200222.fc33.noarch 100/142 Verifying : ncurses-libs-6.2-1.20200222.fc33.i686 101/142 Verifying : nim-srpm-macros-3-2.fc32.noarch 102/142 Verifying : ocaml-srpm-macros-6-2.fc32.noarch 103/142 Verifying : openblas-srpm-macros-2-7.fc32.noarch 104/142 Verifying : openldap-2.4.47-4.fc32.i686 105/142 Verifying : openssl-libs-1:1.1.1d-7.fc33.i686 106/142 Verifying : p11-kit-0.23.20-1.fc32.i686 107/142 Verifying : p11-kit-trust-0.23.20-1.fc32.i686 108/142 Verifying : pam-1.3.1-23.fc33.i686 109/142 Verifying : patch-2.7.6-12.fc32.i686 110/142 Verifying : pcre-8.44-1.fc33.i686 111/142 Verifying : pcre2-10.34-7.fc33.i686 112/142 Verifying : perl-srpm-macros-1-34.fc32.noarch 113/142 Verifying : pkgconf-1.6.3-3.fc32.i686 114/142 Verifying : pkgconf-m4-1.6.3-3.fc32.noarch 115/142 Verifying : pkgconf-pkg-config-1.6.3-3.fc32.i686 116/142 Verifying : popt-1.16-19.fc32.i686 117/142 Verifying : publicsuffix-list-dafsa-20190417-3.fc32.noarch 118/142 Verifying : python-srpm-macros-3-54.fc32.noarch 119/142 Verifying : qt5-srpm-macros-5.13.2-2.fc32.noarch 120/142 Verifying : readline-8.0-4.fc32.i686 121/142 Verifying : redhat-rpm-config-153-1.fc33.noarch 122/142 Verifying : rpm-4.15.1-2.fc32.1.i686 123/142 Verifying : rpm-build-4.15.1-2.fc32.1.i686 124/142 Verifying : rpm-build-libs-4.15.1-2.fc32.1.i686 125/142 Verifying : rpm-libs-4.15.1-2.fc32.1.i686 126/142 Verifying : rust-srpm-macros-13-2.fc33.noarch 127/142 Verifying : sed-4.8-1.fc33.i686 128/142 Verifying : setup-2.13.6-2.fc32.noarch 129/142 Verifying : shadow-utils-2:4.8-4.fc33.i686 130/142 Verifying : systemd-libs-245-1.fc33.i686 131/142 Verifying : tar-2:1.32-4.fc32.i686 132/142 Verifying : tzdata-2019c-3.fc32.noarch 133/142 Verifying : unzip-6.0-47.fc32.i686 134/142 Verifying : util-linux-2.35.1-5.fc33.i686 135/142 Verifying : which-2.21-17.fc32.i686 136/142 Verifying : xxhash-libs-0.7.3-1.fc33.i686 137/142 Verifying : xz-5.2.4-8.fc32.i686 138/142 Verifying : xz-libs-5.2.4-8.fc32.i686 139/142 Verifying : zip-3.0-26.fc32.i686 140/142 Verifying : zlib-1.2.11-21.fc32.i686 141/142 Verifying : zstd-1.4.4-2.fc32.i686 142/142 Installed: alternatives-1.11-6.fc32.i686 audit-libs-3.0-0.18.20191104git1c2f876.fc32.i686 basesystem-11-9.fc32.noarch bash-5.0.11-2.fc32.i686 binutils-2.34-2.fc33.i686 binutils-gold-2.34-2.fc33.i686 bzip2-1.0.8-2.fc32.i686 bzip2-libs-1.0.8-2.fc32.i686 ca-certificates-2020.2.40-3.fc32.noarch coreutils-8.31-10.fc32.i686 coreutils-common-8.31-10.fc32.i686 cpio-2.13-4.fc32.i686 cracklib-2.9.6-22.fc32.i686 crypto-policies-20191128-5.gitcd267a5.fc32.noarch curl-7.69.0-1.fc33.i686 cyrus-sasl-lib-2.1.27-3.fc32.i686 diffutils-3.7-4.fc32.i686 dwz-0.13-2.fc32.i686 efi-srpm-macros-4-4.fc32.noarch elfutils-0.178-9.fc32.i686 elfutils-default-yama-scope-0.178-9.fc32.noarch elfutils-libelf-0.178-9.fc32.i686 elfutils-libs-0.178-9.fc32.i686 expat-2.2.8-2.fc32.i686 fedora-gpg-keys-33-0.3.noarch fedora-release-33-0.1.noarch fedora-release-common-33-0.1.noarch fedora-repos-33-0.3.noarch fedora-repos-rawhide-33-0.3.noarch file-5.38-2.fc32.i686 file-libs-5.38-2.fc32.i686 filesystem-3.14-2.fc32.i686 findutils-1:4.7.0-3.fc32.i686 fonts-srpm-macros-2.0.3-1.fc33.noarch fpc-srpm-macros-1.3-1.fc32.noarch gawk-5.0.1-7.fc32.i686 gc-8.0.4-3.fc32.i686 gdb-minimal-9.1-4.fc33.i686 ghc-srpm-macros-1.5.0-2.fc32.noarch glibc-2.31.9000-3.fc33.i686 glibc-common-2.31.9000-3.fc33.i686 glibc-minimal-langpack-2.31.9000-3.fc33.i686 gmp-1:6.2.0-1.fc33.i686 gnat-srpm-macros-4-11.fc32.noarch go-srpm-macros-3.0.8-5.fc32.noarch grep-3.3-4.fc32.i686 guile22-2.2.6-4.fc32.i686 gzip-1.10-2.fc32.i686 info-6.7-6.fc33.i686 keyutils-libs-1.6-4.fc32.i686 krb5-libs-1.18-5.fc33.i686 libacl-2.2.53-5.fc32.i686 libarchive-3.4.2-1.fc33.i686 libattr-2.4.48-8.fc32.i686 libblkid-2.35.1-5.fc33.i686 libbrotli-1.0.7-10.fc32.i686 libcap-2.26-7.fc32.i686 libcap-ng-0.7.10-2.fc32.i686 libcom_err-1.45.5-3.fc32.i686 libcurl-7.69.0-1.fc33.i686 libdb-5.3.28-40.fc32.i686 libdb-utils-5.3.28-40.fc32.i686 libfdisk-2.35.1-5.fc33.i686 libffi-3.1-24.fc32.i686 libgcc-10.0.1-0.8.fc33.i686 libgcrypt-1.8.5-3.fc32.i686 libgomp-10.0.1-0.8.fc33.i686 libgpg-error-1.37-1.fc33.i686 libidn2-2.3.0-2.fc32.i686 libmetalink-0.1.3-10.fc32.i686 libmount-2.35.1-5.fc33.i686 libnghttp2-1.40.0-2.fc32.i686 libnsl2-1.2.0-6.20180605git4a062cf.fc32.i686 libpkgconf-1.6.3-3.fc32.i686 libpsl-0.21.0-4.fc32.i686 libpwquality-1.4.2-2.fc32.i686 libselinux-3.0-4.fc33.i686 libsemanage-3.0-3.fc32.i686 libsepol-3.0-3.fc32.i686 libsigsegv-2.11-10.fc32.i686 libsmartcols-2.35.1-5.fc33.i686 libssh-0.9.3-2.fc32.i686 libssh-config-0.9.3-2.fc32.noarch libstdc++-10.0.1-0.8.fc33.i686 libtasn1-4.16.0-1.fc32.i686 libtirpc-1.2.5-1.rc2.fc33.i686 libtool-ltdl-2.4.6-33.fc32.i686 libunistring-0.9.10-7.fc32.i686 libutempter-1.1.6-18.fc32.i686 libuuid-2.35.1-5.fc33.i686 libverto-0.3.0-9.fc32.i686 libxcrypt-4.4.15-1.fc33.i686 libxml2-2.9.10-4.fc33.i686 libzstd-1.4.4-2.fc32.i686 lua-libs-5.3.5-7.fc32.i686 lz4-libs-1.9.1-2.fc32.i686 make-1:4.2.1-16.fc32.i686 mpfr-4.0.2-3.fc32.i686 ncurses-6.2-1.20200222.fc33.i686 ncurses-base-6.2-1.20200222.fc33.noarch ncurses-libs-6.2-1.20200222.fc33.i686 nim-srpm-macros-3-2.fc32.noarch ocaml-srpm-macros-6-2.fc32.noarch openblas-srpm-macros-2-7.fc32.noarch openldap-2.4.47-4.fc32.i686 openssl-libs-1:1.1.1d-7.fc33.i686 p11-kit-0.23.20-1.fc32.i686 p11-kit-trust-0.23.20-1.fc32.i686 pam-1.3.1-23.fc33.i686 patch-2.7.6-12.fc32.i686 pcre-8.44-1.fc33.i686 pcre2-10.34-7.fc33.i686 perl-srpm-macros-1-34.fc32.noarch pkgconf-1.6.3-3.fc32.i686 pkgconf-m4-1.6.3-3.fc32.noarch pkgconf-pkg-config-1.6.3-3.fc32.i686 popt-1.16-19.fc32.i686 publicsuffix-list-dafsa-20190417-3.fc32.noarch python-srpm-macros-3-54.fc32.noarch qt5-srpm-macros-5.13.2-2.fc32.noarch readline-8.0-4.fc32.i686 redhat-rpm-config-153-1.fc33.noarch rpm-4.15.1-2.fc32.1.i686 rpm-build-4.15.1-2.fc32.1.i686 rpm-build-libs-4.15.1-2.fc32.1.i686 rpm-libs-4.15.1-2.fc32.1.i686 rust-srpm-macros-13-2.fc33.noarch sed-4.8-1.fc33.i686 setup-2.13.6-2.fc32.noarch shadow-utils-2:4.8-4.fc33.i686 systemd-libs-245-1.fc33.i686 tar-2:1.32-4.fc32.i686 tzdata-2019c-3.fc32.noarch unzip-6.0-47.fc32.i686 util-linux-2.35.1-5.fc33.i686 which-2.21-17.fc32.i686 xxhash-libs-0.7.3-1.fc33.i686 xz-5.2.4-8.fc32.i686 xz-libs-5.2.4-8.fc32.i686 zip-3.0-26.fc32.i686 zlib-1.2.11-21.fc32.i686 zstd-1.4.4-2.fc32.i686 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1583193600 Wrote: /builddir/build/SRPMS/gromacs-2020.1-1.fc33.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/1297528-fedora-rawhide-i386-1583623683.813073/root/var/log/dnf.rpm.log /var/lib/mock/1297528-fedora-rawhide-i386-1583623683.813073/root/var/log/dnf.librepo.log /var/lib/mock/1297528-fedora-rawhide-i386-1583623683.813073/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/tmp/copr-rpmbuild-ioa0baap/gromacs.spec) Config(child) 0 minutes 54 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=86400): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/gromacs-2020.1-1.fc33.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1583623739.679540 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.0 starting (python version = 3.7.6)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/gromacs-2020.1-1.fc33.src.rpm) Config(1297528-fedora-rawhide-i386) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/1297528-fedora-rawhide-i386-1583623739.679540/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.0 INFO: Mock Version: 2.0 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk Copr repository 33 kB/s | 3.3 kB 00:00 local 16 kB/s | 3.8 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for gromacs-2020.1-1.fc33.src.rpm Start: build setup for gromacs-2020.1-1.fc33.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1583193600 Wrote: /builddir/build/SRPMS/gromacs-2020.1-1.fc33.src.rpm No matches found for the following disable plugin patterns: local, spacewalk Copr repository 26 kB/s | 3.3 kB 00:00 local 13 kB/s | 3.8 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: bash-completion noarch 1:2.8-8.fc32 local 262 k cmake i686 3.17.0-0.3.rc2.fc33 local 6.5 M fftw-devel i686 3.3.8-7.fc32 local 130 k gcc-c++ i686 10.0.1-0.8.fc33 local 11 M gsl-devel i686 2.6-2.fc32 local 591 k hwloc i686 2.0.4-3.fc32 local 151 k hwloc-devel i686 2.0.4-3.fc32 local 220 k libX11-devel i686 1.6.9-3.fc32 local 938 k lmfit-devel i686 8.2.2-2.fc32 local 40 k mpich-devel i686 3.3.2-4.fc33 local 900 k openblas-devel i686 0.3.9-1.fc33 local 72 k openmpi-devel i686 4.0.3x-1.fc33 local 1.0 M tng-devel i686 1.8.2-6.fc32 local 30 k Installing dependencies: Lmod i686 8.3.5-1.fc33 local 212 k acl i686 2.2.53-5.fc32 local 73 k annobin i686 9.12-1.fc33 local 112 k autoconf noarch 2.69-32.fc32 local 666 k automake noarch 1.16.1-14.fc32 local 665 k cmake-data noarch 3.17.0-0.3.rc2.fc33 local 1.4 M cmake-filesystem i686 3.17.0-0.3.rc2.fc33 local 14 k cmake-rpm-macros noarch 3.17.0-0.3.rc2.fc33 local 13 k cpp i686 10.0.1-0.8.fc33 local 9.4 M cryptsetup-libs i686 2.3.0-1.fc32 local 479 k dbus i686 1:1.12.16-5.fc33 local 10 k dbus-broker i686 22-1.fc33 local 185 k dbus-common noarch 1:1.12.16-5.fc33 local 17 k device-mapper i686 1.02.167-2.fc32 local 145 k device-mapper-libs i686 1.02.167-2.fc32 local 194 k dracut i686 050-1.fc33 local 322 k emacs-filesystem noarch 1:26.3-2.fc32 local 8.5 k fftw i686 3.3.8-7.fc32 local 53 k fftw-libs i686 3.3.8-7.fc32 local 7.8 k fftw-libs-double i686 3.3.8-7.fc32 local 624 k fftw-libs-long i686 3.3.8-7.fc32 local 538 k fftw-libs-quad i686 3.3.8-7.fc32 local 994 k fftw-libs-single i686 3.3.8-7.fc32 local 608 k fipscheck i686 1.5.0-8.fc32 local 26 k fipscheck-lib i686 1.5.0-8.fc32 local 14 k gcc i686 10.0.1-0.8.fc33 local 29 M gcc-gfortran i686 10.0.1-0.8.fc33 local 11 M gdbm-libs i686 1:1.18.1-3.fc32 local 57 k glibc-devel i686 2.31.9000-3.fc33 local 1.0 M glibc-headers i686 2.31.9000-3.fc33 local 469 k gnutls i686 3.6.12-1.fc32 local 988 k groff-base i686 1.22.3-24.fc33 local 1.1 M gsl i686 2.6-2.fc32 local 1.2 M hwdata noarch 0.333-1.fc33 local 1.4 M hwloc-libs i686 2.0.4-3.fc32 local 2.0 M ibacm i686 28.0-1.fc33 local 97 k infiniband-diags i686 28.0-1.fc33 local 329 k iptables-libs i686 1.8.4-7.fc33 local 378 k isl i686 0.16.1-10.fc32 local 985 k json-c i686 0.13.1-9.fc32 local 39 k jsoncpp i686 1.9.2-2.fc33 local 107 k kbd i686 2.2.0-2.fc33 local 383 k kbd-legacy noarch 2.2.0-2.fc33 local 473 k kbd-misc noarch 2.2.0-2.fc33 local 1.5 M kernel-headers i686 5.6.0-0.rc4.git0.1.fc33 local 1.2 M kmod i686 27-1.fc33 local 132 k kmod-libs i686 27-1.fc33 local 70 k libX11 i686 1.6.9-3.fc32 local 689 k libX11-common noarch 1.6.9-3.fc32 local 153 k libX11-xcb i686 1.6.9-3.fc32 local 11 k libXau i686 1.0.9-3.fc32 local 31 k libXau-devel i686 1.0.9-3.fc32 local 14 k libargon2 i686 20171227-4.fc32 local 33 k libasan i686 10.0.1-0.8.fc33 local 421 k libatomic i686 10.0.1-0.8.fc33 local 22 k libcbor i686 0.5.0-7.fc33 local 48 k libedit i686 3.1-32.20191231cvs.fc32 local 111 k libevent i686 2.1.8-8.fc32 local 268 k libfabric i686 1.9.1rc1-1.fc33 local 566 k libfido2 i686 1.3.1-1.fc33 local 71 k libgfortran i686 10.0.1-0.8.fc33 local 699 k libibumad i686 28.0-1.fc33 local 27 k libibverbs i686 28.0-1.fc33 local 343 k libkcapi i686 1.1.5-2.fc32 local 47 k libkcapi-hmaccalc i686 1.1.5-2.fc32 local 28 k libmnl i686 1.0.4-11.fc32 local 29 k libmpc i686 1.1.0-8.fc32 local 65 k libnetfilter_conntrack i686 1.0.7-4.fc32 local 67 k libnfnetlink i686 1.0.1-17.fc32 local 30 k libnl3 i686 3.5.0-2.fc32 local 350 k libpcap i686 14:1.9.1-3.fc33 local 180 k libquadmath i686 10.0.1-0.8.fc33 local 235 k libquadmath-devel i686 10.0.1-0.8.fc33 local 24 k librdmacm i686 28.0-1.fc33 local 77 k libseccomp i686 2.4.2-3.fc32 local 75 k libstdc++-devel i686 10.0.1-0.8.fc33 local 2.0 M libubsan i686 10.0.1-0.8.fc33 local 189 k libuv i686 1:1.34.2-1.fc32 local 154 k libxcb i686 1.13.1-4.fc32 local 248 k libxcb-devel i686 1.13.1-4.fc32 local 1.0 M libxcrypt-devel i686 4.4.15-1.fc33 local 34 k lmfit i686 8.2.2-2.fc32 local 27 k lua i686 5.3.5-7.fc32 local 193 k lua-filesystem i686 1.6.3-12.fc32 local 34 k lua-json noarch 1.3.2-14.fc32 local 26 k lua-lpeg i686 1.0.2-2.fc32 local 70 k lua-posix i686 33.3.1-16.fc32 local 183 k lua-term i686 0.07-10.fc32 local 15 k m4 i686 1.4.18-12.fc32 local 221 k mpich i686 3.3.2-4.fc33 local 1.4 M munge-libs i686 0.5.13-7.fc32 local 27 k nettle i686 3.5.1-5.fc32 local 332 k openblas i686 0.3.9-1.fc33 local 30 k openblas-openmp i686 0.3.9-1.fc33 local 3.7 M openblas-serial i686 0.3.9-1.fc33 local 3.6 M openblas-threads i686 0.3.9-1.fc33 local 3.7 M openmpi i686 4.0.3x-1.fc33 local 2.4 M opensm-libs i686 3.3.22-3.fc32 local 80 k openssh i686 8.2p1-2.fc33 local 509 k openssh-clients i686 8.2p1-2.fc33 local 707 k orangefs i686 2.9.7-6.fc31 local 1.9 M pciutils i686 3.6.4-1.fc33 local 96 k pciutils-libs i686 3.6.4-1.fc33 local 43 k perl-Carp noarch 1.50-440.fc32 local 29 k perl-Data-Dumper i686 2.174-443.fc32 local 58 k perl-Encode i686 4:3.03-442.fc33 local 1.3 M perl-Errno i686 1.30-450.fc32 local 24 k perl-Exporter noarch 5.74-2.fc32 local 32 k perl-File-Path noarch 2.16-440.fc32 local 36 k perl-File-Temp noarch 1:0.230.900-440.fc32 local 60 k perl-Getopt-Long noarch 1:2.51-2.fc32 local 61 k perl-HTTP-Tiny noarch 0.076-440.fc32 local 55 k perl-IO i686 1.40-450.fc32 local 92 k perl-MIME-Base64 i686 3.15-440.fc32 local 31 k perl-PathTools i686 3.78-441.fc32 local 86 k perl-Pod-Escapes noarch 1:1.07-440.fc32 local 20 k perl-Pod-Perldoc noarch 3.28.01-444.fc33 local 85 k perl-Pod-Simple noarch 1:3.40-2.fc32 local 215 k perl-Pod-Usage noarch 4:1.69-440.fc32 local 32 k perl-Scalar-List-Utils i686 3:1.54-440.fc32 local 71 k perl-Socket i686 4:2.029-5.fc32 local 56 k perl-Storable i686 1:3.15-443.fc32 local 100 k perl-Term-ANSIColor noarch 5.01-2.fc32 local 49 k perl-Term-Cap noarch 1.17-440.fc32 local 22 k perl-Text-ParseWords noarch 3.30-440.fc32 local 16 k perl-Text-Tabs+Wrap noarch 2013.0523-440.fc32 local 23 k perl-Thread-Queue noarch 3.13-440.fc32 local 21 k perl-Time-Local noarch 2:1.300-2.fc32 local 34 k perl-Unicode-Normalize i686 1.26-440.fc32 local 88 k perl-constant noarch 1.33-441.fc32 local 23 k perl-interpreter i686 4:5.30.1-450.fc32 local 6.1 M perl-libs i686 4:5.30.1-450.fc32 local 1.8 M perl-macros i686 4:5.30.1-450.fc32 local 20 k perl-parent noarch 1:0.238-1.fc32 local 14 k perl-podlators noarch 1:4.14-2.fc32 local 113 k perl-threads i686 1:2.22-442.fc32 local 61 k perl-threads-shared i686 1.60-441.fc32 local 46 k pmix i686 3.1.5-1.fc33 local 554 k procps-ng i686 3.3.15-7.fc32 local 331 k python-pip-wheel noarch 19.3.1-2.fc32 local 1.2 M python-setuptools-wheel noarch 45.2.0-1.fc33 local 294 k python3 i686 3.8.2-2.fc33 local 30 k python3-libs i686 3.8.2-2.fc33 local 7.4 M qrencode-libs i686 4.0.2-5.fc32 local 63 k rdma-core i686 28.0-1.fc33 local 60 k rdma-core-devel i686 28.0-1.fc33 local 299 k rhash i686 1.3.8-3.fc32 local 196 k rpm-mpi-hooks noarch 6-5.fc32 local 11 k sqlite-libs i686 3.31.1-1.fc32 local 656 k systemd i686 245-1.fc33 local 4.2 M systemd-pam i686 245-1.fc33 local 302 k systemd-rpm-macros noarch 245-1.fc33 local 25 k systemd-udev i686 245-1.fc33 local 1.5 M tcl i686 1:8.6.10-1.fc32 local 1.1 M tcsh i686 6.22.02-3.fc32 local 465 k tng i686 1.8.2-6.fc32 local 159 k xorg-x11-proto-devel noarch 2019.1-3.fc32 local 262 k Transaction Summary ================================================================================ Install 170 Packages Total download size: 149 M Installed size: 483 M Downloading Packages: (1/170): acl-2.2.53-5.fc32.i686.rpm 209 kB/s | 73 kB 00:00 (2/170): annobin-9.12-1.fc33.i686.rpm 236 kB/s | 112 kB 00:00 (3/170): Lmod-8.3.5-1.fc33.i686.rpm 347 kB/s | 212 kB 00:00 (4/170): automake-1.16.1-14.fc32.noarch.rpm 1.9 MB/s | 665 kB 00:00 (5/170): bash-completion-2.8-8.fc32.noarch.rpm 636 kB/s | 262 kB 00:00 (6/170): autoconf-2.69-32.fc32.noarch.rpm 781 kB/s | 666 kB 00:00 (7/170): cmake-3.17.0-0.3.rc2.fc33.i686.rpm 14 MB/s | 6.5 MB 00:00 (8/170): cmake-filesystem-3.17.0-0.3.rc2.fc33.i 186 kB/s | 14 kB 00:00 (9/170): cmake-rpm-macros-3.17.0-0.3.rc2.fc33.n 187 kB/s | 13 kB 00:00 (10/170): cmake-data-3.17.0-0.3.rc2.fc33.noarch 4.2 MB/s | 1.4 MB 00:00 (11/170): dbus-1.12.16-5.fc33.i686.rpm 129 kB/s | 10 kB 00:00 (12/170): cryptsetup-libs-2.3.0-1.fc32.i686.rpm 4.5 MB/s | 479 kB 00:00 (13/170): dbus-common-1.12.16-5.fc33.noarch.rpm 245 kB/s | 17 kB 00:00 (14/170): dbus-broker-22-1.fc33.i686.rpm 2.3 MB/s | 185 kB 00:00 (15/170): device-mapper-1.02.167-2.fc32.i686.rp 1.8 MB/s | 145 kB 00:00 (16/170): device-mapper-libs-1.02.167-2.fc32.i6 2.2 MB/s | 194 kB 00:00 (17/170): emacs-filesystem-26.3-2.fc32.noarch.r 111 kB/s | 8.5 kB 00:00 (18/170): dracut-050-1.fc33.i686.rpm 3.3 MB/s | 322 kB 00:00 (19/170): fftw-3.3.8-7.fc32.i686.rpm 696 kB/s | 53 kB 00:00 (20/170): fftw-devel-3.3.8-7.fc32.i686.rpm 1.6 MB/s | 130 kB 00:00 (21/170): fftw-libs-3.3.8-7.fc32.i686.rpm 110 kB/s | 7.8 kB 00:00 (22/170): fftw-libs-double-3.3.8-7.fc32.i686.rp 6.1 MB/s | 624 kB 00:00 (23/170): cpp-10.0.1-0.8.fc33.i686.rpm 13 MB/s | 9.4 MB 00:00 (24/170): fftw-libs-long-3.3.8-7.fc32.i686.rpm 3.5 MB/s | 538 kB 00:00 (25/170): fftw-libs-quad-3.3.8-7.fc32.i686.rpm 6.9 MB/s | 994 kB 00:00 (26/170): fipscheck-1.5.0-8.fc32.i686.rpm 350 kB/s | 26 kB 00:00 (27/170): fftw-libs-single-3.3.8-7.fc32.i686.rp 6.4 MB/s | 608 kB 00:00 (28/170): fipscheck-lib-1.5.0-8.fc32.i686.rpm 201 kB/s | 14 kB 00:00 (29/170): gcc-gfortran-10.0.1-0.8.fc33.i686.rpm 17 MB/s | 11 MB 00:00 (30/170): gcc-c++-10.0.1-0.8.fc33.i686.rpm 15 MB/s | 11 MB 00:00 (31/170): gdbm-libs-1.18.1-3.fc32.i686.rpm 623 kB/s | 57 kB 00:00 (32/170): glibc-headers-2.31.9000-3.fc33.i686.r 4.9 MB/s | 469 kB 00:00 (33/170): glibc-devel-2.31.9000-3.fc33.i686.rpm 8.1 MB/s | 1.0 MB 00:00 (34/170): gnutls-3.6.12-1.fc32.i686.rpm 8.7 MB/s | 988 kB 00:00 (35/170): groff-base-1.22.3-24.fc33.i686.rpm 8.5 MB/s | 1.1 MB 00:00 (36/170): gsl-2.6-2.fc32.i686.rpm 8.4 MB/s | 1.2 MB 00:00 (37/170): gsl-devel-2.6-2.fc32.i686.rpm 5.2 MB/s | 591 kB 00:00 (38/170): hwloc-2.0.4-3.fc32.i686.rpm 1.6 MB/s | 151 kB 00:00 (39/170): hwdata-0.333-1.fc33.noarch.rpm 10 MB/s | 1.4 MB 00:00 (40/170): hwloc-devel-2.0.4-3.fc32.i686.rpm 2.6 MB/s | 220 kB 00:00 (41/170): ibacm-28.0-1.fc33.i686.rpm 1.2 MB/s | 97 kB 00:00 (42/170): hwloc-libs-2.0.4-3.fc32.i686.rpm 12 MB/s | 2.0 MB 00:00 (43/170): infiniband-diags-28.0-1.fc33.i686.rpm 3.5 MB/s | 329 kB 00:00 (44/170): gcc-10.0.1-0.8.fc33.i686.rpm 17 MB/s | 29 MB 00:01 (45/170): iptables-libs-1.8.4-7.fc33.i686.rpm 1.0 MB/s | 378 kB 00:00 (46/170): isl-0.16.1-10.fc32.i686.rpm 2.9 MB/s | 985 kB 00:00 (47/170): json-c-0.13.1-9.fc32.i686.rpm 508 kB/s | 39 kB 00:00 (48/170): jsoncpp-1.9.2-2.fc33.i686.rpm 1.3 MB/s | 107 kB 00:00 (49/170): kbd-2.2.0-2.fc33.i686.rpm 4.3 MB/s | 383 kB 00:00 (50/170): kbd-legacy-2.2.0-2.fc33.noarch.rpm 5.3 MB/s | 473 kB 00:00 (51/170): kbd-misc-2.2.0-2.fc33.noarch.rpm 11 MB/s | 1.5 MB 00:00 (52/170): kernel-headers-5.6.0-0.rc4.git0.1.fc3 9.6 MB/s | 1.2 MB 00:00 (53/170): kmod-27-1.fc33.i686.rpm 1.6 MB/s | 132 kB 00:00 (54/170): kmod-libs-27-1.fc33.i686.rpm 917 kB/s | 70 kB 00:00 (55/170): libX11-common-1.6.9-3.fc32.noarch.rpm 1.8 MB/s | 153 kB 00:00 (56/170): libX11-1.6.9-3.fc32.i686.rpm 6.7 MB/s | 689 kB 00:00 (57/170): libX11-devel-1.6.9-3.fc32.i686.rpm 9.2 MB/s | 938 kB 00:00 (58/170): libX11-xcb-1.6.9-3.fc32.i686.rpm 158 kB/s | 11 kB 00:00 (59/170): libXau-1.0.9-3.fc32.i686.rpm 412 kB/s | 31 kB 00:00 (60/170): libXau-devel-1.0.9-3.fc32.i686.rpm 187 kB/s | 14 kB 00:00 (61/170): libargon2-20171227-4.fc32.i686.rpm 454 kB/s | 33 kB 00:00 (62/170): libasan-10.0.1-0.8.fc33.i686.rpm 4.8 MB/s | 421 kB 00:00 (63/170): libatomic-10.0.1-0.8.fc33.i686.rpm 318 kB/s | 22 kB 00:00 (64/170): libcbor-0.5.0-7.fc33.i686.rpm 660 kB/s | 48 kB 00:00 (65/170): libedit-3.1-32.20191231cvs.fc32.i686. 1.5 MB/s | 111 kB 00:00 (66/170): libevent-2.1.8-8.fc32.i686.rpm 3.2 MB/s | 268 kB 00:00 (67/170): libfabric-1.9.1rc1-1.fc33.i686.rpm 5.9 MB/s | 566 kB 00:00 (68/170): libfido2-1.3.1-1.fc33.i686.rpm 975 kB/s | 71 kB 00:00 (69/170): libgfortran-10.0.1-0.8.fc33.i686.rpm 7.4 MB/s | 699 kB 00:00 (70/170): libibumad-28.0-1.fc33.i686.rpm 351 kB/s | 27 kB 00:00 (71/170): libibverbs-28.0-1.fc33.i686.rpm 4.1 MB/s | 343 kB 00:00 (72/170): libkcapi-hmaccalc-1.1.5-2.fc32.i686.r 366 kB/s | 28 kB 00:00 (73/170): libkcapi-1.1.5-2.fc32.i686.rpm 566 kB/s | 47 kB 00:00 (74/170): libmnl-1.0.4-11.fc32.i686.rpm 359 kB/s | 29 kB 00:00 (75/170): libmpc-1.1.0-8.fc32.i686.rpm 845 kB/s | 65 kB 00:00 (76/170): libnetfilter_conntrack-1.0.7-4.fc32.i 906 kB/s | 67 kB 00:00 (77/170): libnfnetlink-1.0.1-17.fc32.i686.rpm 417 kB/s | 30 kB 00:00 (78/170): libpcap-1.9.1-3.fc33.i686.rpm 2.2 MB/s | 180 kB 00:00 (79/170): libnl3-3.5.0-2.fc32.i686.rpm 3.8 MB/s | 350 kB 00:00 (80/170): libquadmath-10.0.1-0.8.fc33.i686.rpm 2.8 MB/s | 235 kB 00:00 (81/170): libquadmath-devel-10.0.1-0.8.fc33.i68 313 kB/s | 24 kB 00:00 (82/170): librdmacm-28.0-1.fc33.i686.rpm 990 kB/s | 77 kB 00:00 (83/170): libseccomp-2.4.2-3.fc32.i686.rpm 970 kB/s | 75 kB 00:00 (84/170): libubsan-10.0.1-0.8.fc33.i686.rpm 2.3 MB/s | 189 kB 00:00 (85/170): libuv-1.34.2-1.fc32.i686.rpm 1.8 MB/s | 154 kB 00:00 (86/170): libstdc++-devel-10.0.1-0.8.fc33.i686. 13 MB/s | 2.0 MB 00:00 (87/170): libxcb-1.13.1-4.fc32.i686.rpm 2.6 MB/s | 248 kB 00:00 (88/170): libxcb-devel-1.13.1-4.fc32.i686.rpm 9.3 MB/s | 1.0 MB 00:00 (89/170): libxcrypt-devel-4.4.15-1.fc33.i686.rp 461 kB/s | 34 kB 00:00 (90/170): lmfit-8.2.2-2.fc32.i686.rpm 348 kB/s | 27 kB 00:00 (91/170): lmfit-devel-8.2.2-2.fc32.i686.rpm 509 kB/s | 40 kB 00:00 (92/170): lua-5.3.5-7.fc32.i686.rpm 2.4 MB/s | 193 kB 00:00 (93/170): lua-filesystem-1.6.3-12.fc32.i686.rpm 452 kB/s | 34 kB 00:00 (94/170): lua-json-1.3.2-14.fc32.noarch.rpm 357 kB/s | 26 kB 00:00 (95/170): lua-lpeg-1.0.2-2.fc32.i686.rpm 933 kB/s | 70 kB 00:00 (96/170): lua-posix-33.3.1-16.fc32.i686.rpm 2.2 MB/s | 183 kB 00:00 (97/170): lua-term-0.07-10.fc32.i686.rpm 197 kB/s | 15 kB 00:00 (98/170): m4-1.4.18-12.fc32.i686.rpm 2.5 MB/s | 221 kB 00:00 (99/170): mpich-devel-3.3.2-4.fc33.i686.rpm 8.1 MB/s | 900 kB 00:00 (100/170): munge-libs-0.5.13-7.fc32.i686.rpm 363 kB/s | 27 kB 00:00 (101/170): mpich-3.3.2-4.fc33.i686.rpm 6.9 MB/s | 1.4 MB 00:00 (102/170): openblas-0.3.9-1.fc33.i686.rpm 399 kB/s | 30 kB 00:00 (103/170): nettle-3.5.1-5.fc32.i686.rpm 3.8 MB/s | 332 kB 00:00 (104/170): openblas-devel-0.3.9-1.fc33.i686.rpm 937 kB/s | 72 kB 00:00 (105/170): openblas-serial-0.3.9-1.fc33.i686.rp 14 MB/s | 3.6 MB 00:00 (106/170): openblas-openmp-0.3.9-1.fc33.i686.rp 13 MB/s | 3.7 MB 00:00 (107/170): openblas-threads-0.3.9-1.fc33.i686.r 14 MB/s | 3.7 MB 00:00 (108/170): openmpi-devel-4.0.3x-1.fc33.i686.rpm 9.2 MB/s | 1.0 MB 00:00 (109/170): opensm-libs-3.3.22-3.fc32.i686.rpm 1.0 MB/s | 80 kB 00:00 (110/170): openmpi-4.0.3x-1.fc33.i686.rpm 13 MB/s | 2.4 MB 00:00 (111/170): openssh-8.2p1-2.fc33.i686.rpm 5.8 MB/s | 509 kB 00:00 (112/170): openssh-clients-8.2p1-2.fc33.i686.rp 6.6 MB/s | 707 kB 00:00 (113/170): pciutils-3.6.4-1.fc33.i686.rpm 1.2 MB/s | 96 kB 00:00 (114/170): orangefs-2.9.7-6.fc31.i686.rpm 12 MB/s | 1.9 MB 00:00 (115/170): pciutils-libs-3.6.4-1.fc33.i686.rpm 548 kB/s | 43 kB 00:00 (116/170): perl-Carp-1.50-440.fc32.noarch.rpm 374 kB/s | 29 kB 00:00 (117/170): perl-Data-Dumper-2.174-443.fc32.i686 793 kB/s | 58 kB 00:00 (118/170): perl-Errno-1.30-450.fc32.i686.rpm 335 kB/s | 24 kB 00:00 (119/170): perl-Encode-3.03-442.fc33.i686.rpm 9.9 MB/s | 1.3 MB 00:00 (120/170): perl-Exporter-5.74-2.fc32.noarch.rpm 425 kB/s | 32 kB 00:00 (121/170): perl-File-Path-2.16-440.fc32.noarch. 488 kB/s | 36 kB 00:00 (122/170): perl-File-Temp-0.230.900-440.fc32.no 801 kB/s | 60 kB 00:00 (123/170): perl-Getopt-Long-2.51-2.fc32.noarch. 814 kB/s | 61 kB 00:00 (124/170): perl-HTTP-Tiny-0.076-440.fc32.noarch 731 kB/s | 55 kB 00:00 (125/170): perl-IO-1.40-450.fc32.i686.rpm 1.2 MB/s | 92 kB 00:00 (126/170): perl-MIME-Base64-3.15-440.fc32.i686. 422 kB/s | 31 kB 00:00 (127/170): perl-PathTools-3.78-441.fc32.i686.rp 1.0 MB/s | 86 kB 00:00 (128/170): perl-Pod-Escapes-1.07-440.fc32.noarc 267 kB/s | 20 kB 00:00 (129/170): perl-Pod-Perldoc-3.28.01-444.fc33.no 1.1 MB/s | 85 kB 00:00 (130/170): perl-Pod-Simple-3.40-2.fc32.noarch.r 2.7 MB/s | 215 kB 00:00 (131/170): perl-Pod-Usage-1.69-440.fc32.noarch. 444 kB/s | 32 kB 00:00 (132/170): perl-Scalar-List-Utils-1.54-440.fc32 968 kB/s | 71 kB 00:00 (133/170): perl-Socket-2.029-5.fc32.i686.rpm 766 kB/s | 56 kB 00:00 (134/170): perl-Storable-3.15-443.fc32.i686.rpm 1.3 MB/s | 100 kB 00:00 (135/170): perl-Term-ANSIColor-5.01-2.fc32.noar 677 kB/s | 49 kB 00:00 (136/170): perl-Term-Cap-1.17-440.fc32.noarch.r 305 kB/s | 22 kB 00:00 (137/170): perl-Text-ParseWords-3.30-440.fc32.n 220 kB/s | 16 kB 00:00 (138/170): perl-Text-Tabs+Wrap-2013.0523-440.fc 322 kB/s | 23 kB 00:00 (139/170): perl-Thread-Queue-3.13-440.fc32.noar 299 kB/s | 21 kB 00:00 (140/170): perl-Time-Local-1.300-2.fc32.noarch. 474 kB/s | 34 kB 00:00 (141/170): perl-Unicode-Normalize-1.26-440.fc32 1.2 MB/s | 88 kB 00:00 (142/170): perl-constant-1.33-441.fc32.noarch.r 310 kB/s | 23 kB 00:00 (143/170): perl-macros-5.30.1-450.fc32.i686.rpm 272 kB/s | 20 kB 00:00 (144/170): perl-libs-5.30.1-450.fc32.i686.rpm 9.4 MB/s | 1.8 MB 00:00 (145/170): perl-parent-0.238-1.fc32.noarch.rpm 176 kB/s | 14 kB 00:00 (146/170): perl-podlators-4.14-2.fc32.noarch.rp 1.4 MB/s | 113 kB 00:00 (147/170): perl-threads-2.22-442.fc32.i686.rpm 757 kB/s | 61 kB 00:00 (148/170): perl-interpreter-5.30.1-450.fc32.i68 15 MB/s | 6.1 MB 00:00 (149/170): perl-threads-shared-1.60-441.fc32.i6 385 kB/s | 46 kB 00:00 (150/170): pmix-3.1.5-1.fc33.i686.rpm 5.1 MB/s | 554 kB 00:00 (151/170): procps-ng-3.3.15-7.fc32.i686.rpm 3.1 MB/s | 331 kB 00:00 (152/170): python-setuptools-wheel-45.2.0-1.fc3 3.1 MB/s | 294 kB 00:00 (153/170): python-pip-wheel-19.3.1-2.fc32.noarc 9.0 MB/s | 1.2 MB 00:00 (154/170): python3-3.8.2-2.fc33.i686.rpm 400 kB/s | 30 kB 00:00 (155/170): qrencode-libs-4.0.2-5.fc32.i686.rpm 773 kB/s | 63 kB 00:00 (156/170): rdma-core-28.0-1.fc33.i686.rpm 767 kB/s | 60 kB 00:00 (157/170): rdma-core-devel-28.0-1.fc33.i686.rpm 2.4 MB/s | 299 kB 00:00 (158/170): rhash-1.3.8-3.fc32.i686.rpm 2.0 MB/s | 196 kB 00:00 (159/170): rpm-mpi-hooks-6-5.fc32.noarch.rpm 117 kB/s | 11 kB 00:00 (160/170): sqlite-libs-3.31.1-1.fc32.i686.rpm 6.7 MB/s | 656 kB 00:00 (161/170): python3-libs-3.8.2-2.fc33.i686.rpm 17 MB/s | 7.4 MB 00:00 (162/170): systemd-pam-245-1.fc33.i686.rpm 2.5 MB/s | 302 kB 00:00 (163/170): systemd-rpm-macros-245-1.fc33.noarch 348 kB/s | 25 kB 00:00 (164/170): systemd-245-1.fc33.i686.rpm 14 MB/s | 4.2 MB 00:00 (165/170): systemd-udev-245-1.fc33.i686.rpm 4.8 MB/s | 1.5 MB 00:00 (166/170): tcsh-6.22.02-3.fc32.i686.rpm 3.0 MB/s | 465 kB 00:00 (167/170): tcl-8.6.10-1.fc32.i686.rpm 4.1 MB/s | 1.1 MB 00:00 (168/170): tng-1.8.2-6.fc32.i686.rpm 1.5 MB/s | 159 kB 00:00 (169/170): tng-devel-1.8.2-6.fc32.i686.rpm 281 kB/s | 30 kB 00:00 (170/170): xorg-x11-proto-devel-2019.1-3.fc32.n 2.7 MB/s | 262 kB 00:00 -------------------------------------------------------------------------------- Total 18 MB/s | 149 MB 00:08 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : perl-Exporter-5.74-2.fc32.noarch 1/170 Installing : perl-libs-4:5.30.1-450.fc32.i686 2/170 Installing : perl-Carp-1.50-440.fc32.noarch 3/170 Installing : perl-parent-1:0.238-1.fc32.noarch 4/170 Installing : openblas-0.3.9-1.fc33.i686 5/170 Installing : perl-Text-ParseWords-3.30-440.fc32.noarch 6/170 Installing : cmake-filesystem-3.17.0-0.3.rc2.fc33.i686 7/170 Installing : xorg-x11-proto-devel-2019.1-3.fc32.noarch 8/170 Installing : emacs-filesystem-1:26.3-2.fc32.noarch 9/170 Installing : perl-Scalar-List-Utils-3:1.54-440.fc32.i686 10/170 Installing : hwloc-libs-2.0.4-3.fc32.i686 11/170 Installing : libquadmath-10.0.1-0.8.fc33.i686 12/170 Installing : libgfortran-10.0.1-0.8.fc33.i686 13/170 Installing : libnl3-3.5.0-2.fc32.i686 14/170 Installing : libmpc-1.1.0-8.fc32.i686 15/170 Installing : kmod-libs-27-1.fc33.i686 16/170 Installing : fftw-libs-quad-3.3.8-7.fc32.i686 17/170 Installing : libevent-2.1.8-8.fc32.i686 18/170 Installing : kmod-27-1.fc33.i686 19/170 Installing : fftw-libs-single-3.3.8-7.fc32.i686 20/170 Installing : fftw-libs-long-3.3.8-7.fc32.i686 21/170 Installing : fftw-libs-double-3.3.8-7.fc32.i686 22/170 Installing : procps-ng-3.3.15-7.fc32.i686 23/170 Installing : libatomic-10.0.1-0.8.fc33.i686 24/170 Installing : libXau-1.0.9-3.fc32.i686 25/170 Installing : libxcb-1.13.1-4.fc32.i686 26/170 Installing : gdbm-libs-1:1.18.1-3.fc32.i686 27/170 Installing : libXau-devel-1.0.9-3.fc32.i686 28/170 Installing : libxcb-devel-1.13.1-4.fc32.i686 29/170 Installing : fftw-libs-3.3.8-7.fc32.i686 30/170 Installing : perl-Term-ANSIColor-5.01-2.fc32.noarch 31/170 Installing : systemd-rpm-macros-245-1.fc33.noarch 32/170 Installing : python-setuptools-wheel-45.2.0-1.fc33.noarch 33/170 Installing : python-pip-wheel-19.3.1-2.fc32.noarch 34/170 Installing : libstdc++-devel-10.0.1-0.8.fc33.i686 35/170 Installing : libX11-common-1.6.9-3.fc32.noarch 36/170 Installing : kernel-headers-5.6.0-0.rc4.git0.1.fc33.i686 37/170 Running scriptlet: glibc-headers-2.31.9000-3.fc33.i686 38/170 Installing : glibc-headers-2.31.9000-3.fc33.i686 38/170 Installing : libxcrypt-devel-4.4.15-1.fc33.i686 39/170 Installing : glibc-devel-2.31.9000-3.fc33.i686 40/170 Installing : kbd-misc-2.2.0-2.fc33.noarch 41/170 Installing : kbd-legacy-2.2.0-2.fc33.noarch 42/170 Installing : hwdata-0.333-1.fc33.noarch 43/170 Installing : kbd-2.2.0-2.fc33.i686 44/170 Installing : libX11-1.6.9-3.fc32.i686 45/170 Installing : fftw-3.3.8-7.fc32.i686 46/170 Installing : cpp-10.0.1-0.8.fc33.i686 47/170 Installing : openblas-openmp-0.3.9-1.fc33.i686 48/170 Installing : openblas-serial-0.3.9-1.fc33.i686 49/170 Installing : openblas-threads-0.3.9-1.fc33.i686 50/170 Installing : perl-Unicode-Normalize-1.26-440.fc32.i686 51/170 Installing : perl-Errno-1.30-450.fc32.i686 52/170 Installing : perl-Socket-4:2.029-5.fc32.i686 53/170 Installing : perl-Text-Tabs+Wrap-2013.0523-440.fc32.noarch 54/170 Installing : perl-File-Path-2.16-440.fc32.noarch 55/170 Installing : perl-IO-1.40-450.fc32.i686 56/170 Installing : perl-PathTools-3.78-441.fc32.i686 57/170 Installing : perl-constant-1.33-441.fc32.noarch 58/170 Installing : perl-macros-4:5.30.1-450.fc32.i686 59/170 Installing : perl-threads-1:2.22-442.fc32.i686 60/170 Installing : perl-threads-shared-1.60-441.fc32.i686 61/170 Installing : perl-interpreter-4:5.30.1-450.fc32.i686 62/170 Installing : perl-File-Temp-1:0.230.900-440.fc32.noarch 63/170 Installing : perl-Pod-Escapes-1:1.07-440.fc32.noarch 64/170 Installing : perl-Term-Cap-1.17-440.fc32.noarch 65/170 Installing : perl-Thread-Queue-3.13-440.fc32.noarch 66/170 Installing : perl-Time-Local-2:1.300-2.fc32.noarch 67/170 Installing : perl-MIME-Base64-3.15-440.fc32.i686 68/170 Installing : perl-HTTP-Tiny-0.076-440.fc32.noarch 69/170 Installing : perl-Data-Dumper-2.174-443.fc32.i686 70/170 Installing : perl-Storable-1:3.15-443.fc32.i686 71/170 Installing : fipscheck-lib-1.5.0-8.fc32.i686 72/170 Installing : fipscheck-1.5.0-8.fc32.i686 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lua-posix-33.3.1-16.fc32.i686 92/170 Installing : lua-lpeg-1.0.2-2.fc32.i686 93/170 Installing : lua-json-1.3.2-14.fc32.noarch 94/170 Installing : lua-filesystem-1.6.3-12.fc32.i686 95/170 Installing : lua-5.3.5-7.fc32.i686 96/170 Installing : Lmod-8.3.5-1.fc33.i686 97/170 Running scriptlet: Lmod-8.3.5-1.fc33.i686 97/170 Installing : rpm-mpi-hooks-6-5.fc32.noarch 98/170 Installing : mpich-3.3.2-4.fc33.i686 99/170 Installing : lmfit-8.2.2-2.fc32.i686 100/170 Installing : libuv-1:1.34.2-1.fc32.i686 101/170 Installing : libubsan-10.0.1-0.8.fc33.i686 102/170 Installing : libseccomp-2.4.2-3.fc32.i686 103/170 Installing : libpcap-14:1.9.1-3.fc33.i686 104/170 Installing : libnfnetlink-1.0.1-17.fc32.i686 105/170 Installing : libmnl-1.0.4-11.fc32.i686 106/170 Installing : libnetfilter_conntrack-1.0.7-4.fc32.i686 107/170 Installing : iptables-libs-1.8.4-7.fc33.i686 108/170 Installing : libedit-3.1-32.20191231cvs.fc32.i686 109/170 Installing : libcbor-0.5.0-7.fc33.i686 110/170 Installing : libasan-10.0.1-0.8.fc33.i686 111/170 Installing : libargon2-20171227-4.fc32.i686 112/170 Installing : libX11-xcb-1.6.9-3.fc32.i686 113/170 Installing : jsoncpp-1.9.2-2.fc33.i686 114/170 Installing : cmake-data-3.17.0-0.3.rc2.fc33.noarch 115/170 Installing : cmake-3.17.0-0.3.rc2.fc33.i686 116/170 Installing : json-c-0.13.1-9.fc32.i686 117/170 Installing : isl-0.16.1-10.fc32.i686 118/170 Installing : gcc-10.0.1-0.8.fc33.i686 119/170 Installing : libquadmath-devel-10.0.1-0.8.fc33.i686 120/170 Installing : gcc-gfortran-10.0.1-0.8.fc33.i686 121/170 Installing : gsl-2.6-2.fc32.i686 122/170 Running scriptlet: groff-base-1.22.3-24.fc33.i686 123/170 Installing : groff-base-1.22.3-24.fc33.i686 123/170 Running scriptlet: groff-base-1.22.3-24.fc33.i686 123/170 Installing : perl-Encode-4:3.03-442.fc33.i686 124/170 Installing : perl-Pod-Perldoc-3.28.01-444.fc33.noarch 125/170 Installing : perl-Pod-Simple-1:3.40-2.fc32.noarch 126/170 Installing : perl-Getopt-Long-1:2.51-2.fc32.noarch 127/170 Installing : perl-Pod-Usage-4:1.69-440.fc32.noarch 128/170 Installing : perl-podlators-1:4.14-2.fc32.noarch 129/170 Installing : autoconf-2.69-32.fc32.noarch 130/170 Installing : automake-1.16.1-14.fc32.noarch 131/170 Installing : acl-2.2.53-5.fc32.i686 132/170 Installing : gsl-devel-2.6-2.fc32.i686 133/170 Installing : mpich-devel-3.3.2-4.fc33.i686 134/170 Installing : libX11-devel-1.6.9-3.fc32.i686 135/170 Installing : lmfit-devel-8.2.2-2.fc32.i686 136/170 Installing : tng-devel-1.8.2-6.fc32.i686 137/170 Installing : openblas-devel-0.3.9-1.fc33.i686 138/170 Installing : fftw-devel-3.3.8-7.fc32.i686 139/170 Installing : bash-completion-1:2.8-8.fc32.noarch 140/170 Installing : device-mapper-1.02.167-2.fc32.i686 141/170 Installing : device-mapper-libs-1.02.167-2.fc32.i686 142/170 Installing : cryptsetup-libs-2.3.0-1.fc32.i686 143/170 Installing : dbus-1:1.12.16-5.fc33.i686 144/170 Installing : systemd-pam-245-1.fc33.i686 145/170 Running scriptlet: systemd-245-1.fc33.i686 146/170 Installing : systemd-245-1.fc33.i686 146/170 Running scriptlet: systemd-245-1.fc33.i686 146/170 Installing : dbus-common-1:1.12.16-5.fc33.noarch 147/170 Running scriptlet: dbus-common-1:1.12.16-5.fc33.noarch 147/170 Created symlink /etc/systemd/system/sockets.target.wants/dbus.socket → /usr/lib/systemd/system/dbus.socket. Created symlink /etc/systemd/user/sockets.target.wants/dbus.socket → /usr/lib/systemd/user/dbus.socket. Running scriptlet: dbus-broker-22-1.fc33.i686 148/170 Installing : dbus-broker-22-1.fc33.i686 148/170 Running scriptlet: dbus-broker-22-1.fc33.i686 148/170 Failed to get unit file state for dbus-daemon.service: No such file or directory Failed to get unit file state for dbus-daemon.service: No such file or directory Failed to disable unit, unit dbus-daemon.service does not exist. Failed to disable unit, unit dbus-daemon.service does not exist. Installing : libfido2-1.3.1-1.fc33.i686 149/170 Installing : openssh-clients-8.2p1-2.fc33.i686 150/170 Installing : libkcapi-1.1.5-2.fc32.i686 151/170 Installing : libkcapi-hmaccalc-1.1.5-2.fc32.i686 152/170 Running scriptlet: systemd-udev-245-1.fc33.i686 153/170 Installing : systemd-udev-245-1.fc33.i686 153/170 Running scriptlet: systemd-udev-245-1.fc33.i686 153/170 Installing : dracut-050-1.fc33.i686 154/170 Installing : rdma-core-28.0-1.fc33.i686 155/170 Running scriptlet: rdma-core-28.0-1.fc33.i686 155/170 Running in chroot, ignoring request. Running in chroot, ignoring request. Running in chroot, ignoring request. Installing : libibverbs-28.0-1.fc33.i686 156/170 Installing : libibumad-28.0-1.fc33.i686 157/170 Installing : librdmacm-28.0-1.fc33.i686 158/170 Installing : libfabric-1.9.1rc1-1.fc33.i686 159/170 Installing : ibacm-28.0-1.fc33.i686 160/170 Running scriptlet: ibacm-28.0-1.fc33.i686 160/170 Installing : infiniband-diags-28.0-1.fc33.i686 161/170 Installing : rdma-core-devel-28.0-1.fc33.i686 162/170 Installing : opensm-libs-3.3.22-3.fc32.i686 163/170 Installing : orangefs-2.9.7-6.fc31.i686 164/170 Installing : hwloc-devel-2.0.4-3.fc32.i686 165/170 Installing : openmpi-4.0.3x-1.fc33.i686 166/170 Installing : openmpi-devel-4.0.3x-1.fc33.i686 167/170 Installing : hwloc-2.0.4-3.fc32.i686 168/170 Running scriptlet: hwloc-2.0.4-3.fc32.i686 168/170 Installing : annobin-9.12-1.fc33.i686 169/170 Installing : gcc-c++-10.0.1-0.8.fc33.i686 170/170 Running scriptlet: gcc-c++-10.0.1-0.8.fc33.i686 170/170 Verifying : Lmod-8.3.5-1.fc33.i686 1/170 Verifying : acl-2.2.53-5.fc32.i686 2/170 Verifying : annobin-9.12-1.fc33.i686 3/170 Verifying : autoconf-2.69-32.fc32.noarch 4/170 Verifying : automake-1.16.1-14.fc32.noarch 5/170 Verifying : bash-completion-1:2.8-8.fc32.noarch 6/170 Verifying : cmake-3.17.0-0.3.rc2.fc33.i686 7/170 Verifying : cmake-data-3.17.0-0.3.rc2.fc33.noarch 8/170 Verifying : cmake-filesystem-3.17.0-0.3.rc2.fc33.i686 9/170 Verifying : cmake-rpm-macros-3.17.0-0.3.rc2.fc33.noarch 10/170 Verifying : cpp-10.0.1-0.8.fc33.i686 11/170 Verifying : cryptsetup-libs-2.3.0-1.fc32.i686 12/170 Verifying : dbus-1:1.12.16-5.fc33.i686 13/170 Verifying : dbus-broker-22-1.fc33.i686 14/170 Verifying : dbus-common-1:1.12.16-5.fc33.noarch 15/170 Verifying : device-mapper-1.02.167-2.fc32.i686 16/170 Verifying : device-mapper-libs-1.02.167-2.fc32.i686 17/170 Verifying : dracut-050-1.fc33.i686 18/170 Verifying : emacs-filesystem-1:26.3-2.fc32.noarch 19/170 Verifying : fftw-3.3.8-7.fc32.i686 20/170 Verifying : fftw-devel-3.3.8-7.fc32.i686 21/170 Verifying : fftw-libs-3.3.8-7.fc32.i686 22/170 Verifying : fftw-libs-double-3.3.8-7.fc32.i686 23/170 Verifying : fftw-libs-long-3.3.8-7.fc32.i686 24/170 Verifying : fftw-libs-quad-3.3.8-7.fc32.i686 25/170 Verifying : fftw-libs-single-3.3.8-7.fc32.i686 26/170 Verifying : fipscheck-1.5.0-8.fc32.i686 27/170 Verifying : fipscheck-lib-1.5.0-8.fc32.i686 28/170 Verifying : gcc-10.0.1-0.8.fc33.i686 29/170 Verifying : gcc-c++-10.0.1-0.8.fc33.i686 30/170 Verifying : gcc-gfortran-10.0.1-0.8.fc33.i686 31/170 Verifying : gdbm-libs-1:1.18.1-3.fc32.i686 32/170 Verifying : glibc-devel-2.31.9000-3.fc33.i686 33/170 Verifying : glibc-headers-2.31.9000-3.fc33.i686 34/170 Verifying : gnutls-3.6.12-1.fc32.i686 35/170 Verifying : groff-base-1.22.3-24.fc33.i686 36/170 Verifying : gsl-2.6-2.fc32.i686 37/170 Verifying : gsl-devel-2.6-2.fc32.i686 38/170 Verifying : hwdata-0.333-1.fc33.noarch 39/170 Verifying : hwloc-2.0.4-3.fc32.i686 40/170 Verifying : hwloc-devel-2.0.4-3.fc32.i686 41/170 Verifying : hwloc-libs-2.0.4-3.fc32.i686 42/170 Verifying : ibacm-28.0-1.fc33.i686 43/170 Verifying : infiniband-diags-28.0-1.fc33.i686 44/170 Verifying : iptables-libs-1.8.4-7.fc33.i686 45/170 Verifying : isl-0.16.1-10.fc32.i686 46/170 Verifying : json-c-0.13.1-9.fc32.i686 47/170 Verifying : jsoncpp-1.9.2-2.fc33.i686 48/170 Verifying : kbd-2.2.0-2.fc33.i686 49/170 Verifying : kbd-legacy-2.2.0-2.fc33.noarch 50/170 Verifying : kbd-misc-2.2.0-2.fc33.noarch 51/170 Verifying : kernel-headers-5.6.0-0.rc4.git0.1.fc33.i686 52/170 Verifying : kmod-27-1.fc33.i686 53/170 Verifying : kmod-libs-27-1.fc33.i686 54/170 Verifying : libX11-1.6.9-3.fc32.i686 55/170 Verifying : libX11-common-1.6.9-3.fc32.noarch 56/170 Verifying : libX11-devel-1.6.9-3.fc32.i686 57/170 Verifying : libX11-xcb-1.6.9-3.fc32.i686 58/170 Verifying : libXau-1.0.9-3.fc32.i686 59/170 Verifying : libXau-devel-1.0.9-3.fc32.i686 60/170 Verifying : libargon2-20171227-4.fc32.i686 61/170 Verifying : libasan-10.0.1-0.8.fc33.i686 62/170 Verifying : libatomic-10.0.1-0.8.fc33.i686 63/170 Verifying : libcbor-0.5.0-7.fc33.i686 64/170 Verifying : libedit-3.1-32.20191231cvs.fc32.i686 65/170 Verifying : libevent-2.1.8-8.fc32.i686 66/170 Verifying : libfabric-1.9.1rc1-1.fc33.i686 67/170 Verifying : libfido2-1.3.1-1.fc33.i686 68/170 Verifying : libgfortran-10.0.1-0.8.fc33.i686 69/170 Verifying : libibumad-28.0-1.fc33.i686 70/170 Verifying : libibverbs-28.0-1.fc33.i686 71/170 Verifying : libkcapi-1.1.5-2.fc32.i686 72/170 Verifying : libkcapi-hmaccalc-1.1.5-2.fc32.i686 73/170 Verifying : libmnl-1.0.4-11.fc32.i686 74/170 Verifying : libmpc-1.1.0-8.fc32.i686 75/170 Verifying : libnetfilter_conntrack-1.0.7-4.fc32.i686 76/170 Verifying : libnfnetlink-1.0.1-17.fc32.i686 77/170 Verifying : libnl3-3.5.0-2.fc32.i686 78/170 Verifying : libpcap-14:1.9.1-3.fc33.i686 79/170 Verifying : libquadmath-10.0.1-0.8.fc33.i686 80/170 Verifying : libquadmath-devel-10.0.1-0.8.fc33.i686 81/170 Verifying : librdmacm-28.0-1.fc33.i686 82/170 Verifying : libseccomp-2.4.2-3.fc32.i686 83/170 Verifying : libstdc++-devel-10.0.1-0.8.fc33.i686 84/170 Verifying : libubsan-10.0.1-0.8.fc33.i686 85/170 Verifying : libuv-1:1.34.2-1.fc32.i686 86/170 Verifying : libxcb-1.13.1-4.fc32.i686 87/170 Verifying : libxcb-devel-1.13.1-4.fc32.i686 88/170 Verifying : libxcrypt-devel-4.4.15-1.fc33.i686 89/170 Verifying : lmfit-8.2.2-2.fc32.i686 90/170 Verifying : lmfit-devel-8.2.2-2.fc32.i686 91/170 Verifying : lua-5.3.5-7.fc32.i686 92/170 Verifying : lua-filesystem-1.6.3-12.fc32.i686 93/170 Verifying : lua-json-1.3.2-14.fc32.noarch 94/170 Verifying : lua-lpeg-1.0.2-2.fc32.i686 95/170 Verifying : lua-posix-33.3.1-16.fc32.i686 96/170 Verifying : lua-term-0.07-10.fc32.i686 97/170 Verifying : m4-1.4.18-12.fc32.i686 98/170 Verifying : mpich-3.3.2-4.fc33.i686 99/170 Verifying : mpich-devel-3.3.2-4.fc33.i686 100/170 Verifying : munge-libs-0.5.13-7.fc32.i686 101/170 Verifying : nettle-3.5.1-5.fc32.i686 102/170 Verifying : openblas-0.3.9-1.fc33.i686 103/170 Verifying : openblas-devel-0.3.9-1.fc33.i686 104/170 Verifying : openblas-openmp-0.3.9-1.fc33.i686 105/170 Verifying : openblas-serial-0.3.9-1.fc33.i686 106/170 Verifying : openblas-threads-0.3.9-1.fc33.i686 107/170 Verifying : openmpi-4.0.3x-1.fc33.i686 108/170 Verifying : openmpi-devel-4.0.3x-1.fc33.i686 109/170 Verifying : opensm-libs-3.3.22-3.fc32.i686 110/170 Verifying : openssh-8.2p1-2.fc33.i686 111/170 Verifying : openssh-clients-8.2p1-2.fc33.i686 112/170 Verifying : orangefs-2.9.7-6.fc31.i686 113/170 Verifying : pciutils-3.6.4-1.fc33.i686 114/170 Verifying : pciutils-libs-3.6.4-1.fc33.i686 115/170 Verifying : perl-Carp-1.50-440.fc32.noarch 116/170 Verifying : perl-Data-Dumper-2.174-443.fc32.i686 117/170 Verifying : perl-Encode-4:3.03-442.fc33.i686 118/170 Verifying : perl-Errno-1.30-450.fc32.i686 119/170 Verifying : perl-Exporter-5.74-2.fc32.noarch 120/170 Verifying : perl-File-Path-2.16-440.fc32.noarch 121/170 Verifying : perl-File-Temp-1:0.230.900-440.fc32.noarch 122/170 Verifying : perl-Getopt-Long-1:2.51-2.fc32.noarch 123/170 Verifying : perl-HTTP-Tiny-0.076-440.fc32.noarch 124/170 Verifying : perl-IO-1.40-450.fc32.i686 125/170 Verifying : perl-MIME-Base64-3.15-440.fc32.i686 126/170 Verifying : perl-PathTools-3.78-441.fc32.i686 127/170 Verifying : perl-Pod-Escapes-1:1.07-440.fc32.noarch 128/170 Verifying : perl-Pod-Perldoc-3.28.01-444.fc33.noarch 129/170 Verifying : perl-Pod-Simple-1:3.40-2.fc32.noarch 130/170 Verifying : perl-Pod-Usage-4:1.69-440.fc32.noarch 131/170 Verifying : perl-Scalar-List-Utils-3:1.54-440.fc32.i686 132/170 Verifying : perl-Socket-4:2.029-5.fc32.i686 133/170 Verifying : perl-Storable-1:3.15-443.fc32.i686 134/170 Verifying : perl-Term-ANSIColor-5.01-2.fc32.noarch 135/170 Verifying : perl-Term-Cap-1.17-440.fc32.noarch 136/170 Verifying : perl-Text-ParseWords-3.30-440.fc32.noarch 137/170 Verifying : perl-Text-Tabs+Wrap-2013.0523-440.fc32.noarch 138/170 Verifying : perl-Thread-Queue-3.13-440.fc32.noarch 139/170 Verifying : perl-Time-Local-2:1.300-2.fc32.noarch 140/170 Verifying : perl-Unicode-Normalize-1.26-440.fc32.i686 141/170 Verifying : perl-constant-1.33-441.fc32.noarch 142/170 Verifying : perl-interpreter-4:5.30.1-450.fc32.i686 143/170 Verifying : perl-libs-4:5.30.1-450.fc32.i686 144/170 Verifying : perl-macros-4:5.30.1-450.fc32.i686 145/170 Verifying : perl-parent-1:0.238-1.fc32.noarch 146/170 Verifying : perl-podlators-1:4.14-2.fc32.noarch 147/170 Verifying : perl-threads-1:2.22-442.fc32.i686 148/170 Verifying : perl-threads-shared-1.60-441.fc32.i686 149/170 Verifying : pmix-3.1.5-1.fc33.i686 150/170 Verifying : procps-ng-3.3.15-7.fc32.i686 151/170 Verifying : python-pip-wheel-19.3.1-2.fc32.noarch 152/170 Verifying : python-setuptools-wheel-45.2.0-1.fc33.noarch 153/170 Verifying : python3-3.8.2-2.fc33.i686 154/170 Verifying : python3-libs-3.8.2-2.fc33.i686 155/170 Verifying : qrencode-libs-4.0.2-5.fc32.i686 156/170 Verifying : rdma-core-28.0-1.fc33.i686 157/170 Verifying : rdma-core-devel-28.0-1.fc33.i686 158/170 Verifying : rhash-1.3.8-3.fc32.i686 159/170 Verifying : rpm-mpi-hooks-6-5.fc32.noarch 160/170 Verifying : sqlite-libs-3.31.1-1.fc32.i686 161/170 Verifying : systemd-245-1.fc33.i686 162/170 Verifying : systemd-pam-245-1.fc33.i686 163/170 Verifying : systemd-rpm-macros-245-1.fc33.noarch 164/170 Verifying : systemd-udev-245-1.fc33.i686 165/170 Verifying : tcl-1:8.6.10-1.fc32.i686 166/170 Verifying : tcsh-6.22.02-3.fc32.i686 167/170 Verifying : tng-1.8.2-6.fc32.i686 168/170 Verifying : tng-devel-1.8.2-6.fc32.i686 169/170 Verifying : xorg-x11-proto-devel-2019.1-3.fc32.noarch 170/170 Installed: Lmod-8.3.5-1.fc33.i686 acl-2.2.53-5.fc32.i686 annobin-9.12-1.fc33.i686 autoconf-2.69-32.fc32.noarch automake-1.16.1-14.fc32.noarch bash-completion-1:2.8-8.fc32.noarch cmake-3.17.0-0.3.rc2.fc33.i686 cmake-data-3.17.0-0.3.rc2.fc33.noarch cmake-filesystem-3.17.0-0.3.rc2.fc33.i686 cmake-rpm-macros-3.17.0-0.3.rc2.fc33.noarch cpp-10.0.1-0.8.fc33.i686 cryptsetup-libs-2.3.0-1.fc32.i686 dbus-1:1.12.16-5.fc33.i686 dbus-broker-22-1.fc33.i686 dbus-common-1:1.12.16-5.fc33.noarch device-mapper-1.02.167-2.fc32.i686 device-mapper-libs-1.02.167-2.fc32.i686 dracut-050-1.fc33.i686 emacs-filesystem-1:26.3-2.fc32.noarch fftw-3.3.8-7.fc32.i686 fftw-devel-3.3.8-7.fc32.i686 fftw-libs-3.3.8-7.fc32.i686 fftw-libs-double-3.3.8-7.fc32.i686 fftw-libs-long-3.3.8-7.fc32.i686 fftw-libs-quad-3.3.8-7.fc32.i686 fftw-libs-single-3.3.8-7.fc32.i686 fipscheck-1.5.0-8.fc32.i686 fipscheck-lib-1.5.0-8.fc32.i686 gcc-10.0.1-0.8.fc33.i686 gcc-c++-10.0.1-0.8.fc33.i686 gcc-gfortran-10.0.1-0.8.fc33.i686 gdbm-libs-1:1.18.1-3.fc32.i686 glibc-devel-2.31.9000-3.fc33.i686 glibc-headers-2.31.9000-3.fc33.i686 gnutls-3.6.12-1.fc32.i686 groff-base-1.22.3-24.fc33.i686 gsl-2.6-2.fc32.i686 gsl-devel-2.6-2.fc32.i686 hwdata-0.333-1.fc33.noarch hwloc-2.0.4-3.fc32.i686 hwloc-devel-2.0.4-3.fc32.i686 hwloc-libs-2.0.4-3.fc32.i686 ibacm-28.0-1.fc33.i686 infiniband-diags-28.0-1.fc33.i686 iptables-libs-1.8.4-7.fc33.i686 isl-0.16.1-10.fc32.i686 json-c-0.13.1-9.fc32.i686 jsoncpp-1.9.2-2.fc33.i686 kbd-2.2.0-2.fc33.i686 kbd-legacy-2.2.0-2.fc33.noarch kbd-misc-2.2.0-2.fc33.noarch kernel-headers-5.6.0-0.rc4.git0.1.fc33.i686 kmod-27-1.fc33.i686 kmod-libs-27-1.fc33.i686 libX11-1.6.9-3.fc32.i686 libX11-common-1.6.9-3.fc32.noarch libX11-devel-1.6.9-3.fc32.i686 libX11-xcb-1.6.9-3.fc32.i686 libXau-1.0.9-3.fc32.i686 libXau-devel-1.0.9-3.fc32.i686 libargon2-20171227-4.fc32.i686 libasan-10.0.1-0.8.fc33.i686 libatomic-10.0.1-0.8.fc33.i686 libcbor-0.5.0-7.fc33.i686 libedit-3.1-32.20191231cvs.fc32.i686 libevent-2.1.8-8.fc32.i686 libfabric-1.9.1rc1-1.fc33.i686 libfido2-1.3.1-1.fc33.i686 libgfortran-10.0.1-0.8.fc33.i686 libibumad-28.0-1.fc33.i686 libibverbs-28.0-1.fc33.i686 libkcapi-1.1.5-2.fc32.i686 libkcapi-hmaccalc-1.1.5-2.fc32.i686 libmnl-1.0.4-11.fc32.i686 libmpc-1.1.0-8.fc32.i686 libnetfilter_conntrack-1.0.7-4.fc32.i686 libnfnetlink-1.0.1-17.fc32.i686 libnl3-3.5.0-2.fc32.i686 libpcap-14:1.9.1-3.fc33.i686 libquadmath-10.0.1-0.8.fc33.i686 libquadmath-devel-10.0.1-0.8.fc33.i686 librdmacm-28.0-1.fc33.i686 libseccomp-2.4.2-3.fc32.i686 libstdc++-devel-10.0.1-0.8.fc33.i686 libubsan-10.0.1-0.8.fc33.i686 libuv-1:1.34.2-1.fc32.i686 libxcb-1.13.1-4.fc32.i686 libxcb-devel-1.13.1-4.fc32.i686 libxcrypt-devel-4.4.15-1.fc33.i686 lmfit-8.2.2-2.fc32.i686 lmfit-devel-8.2.2-2.fc32.i686 lua-5.3.5-7.fc32.i686 lua-filesystem-1.6.3-12.fc32.i686 lua-json-1.3.2-14.fc32.noarch lua-lpeg-1.0.2-2.fc32.i686 lua-posix-33.3.1-16.fc32.i686 lua-term-0.07-10.fc32.i686 m4-1.4.18-12.fc32.i686 mpich-3.3.2-4.fc33.i686 mpich-devel-3.3.2-4.fc33.i686 munge-libs-0.5.13-7.fc32.i686 nettle-3.5.1-5.fc32.i686 openblas-0.3.9-1.fc33.i686 openblas-devel-0.3.9-1.fc33.i686 openblas-openmp-0.3.9-1.fc33.i686 openblas-serial-0.3.9-1.fc33.i686 openblas-threads-0.3.9-1.fc33.i686 openmpi-4.0.3x-1.fc33.i686 openmpi-devel-4.0.3x-1.fc33.i686 opensm-libs-3.3.22-3.fc32.i686 openssh-8.2p1-2.fc33.i686 openssh-clients-8.2p1-2.fc33.i686 orangefs-2.9.7-6.fc31.i686 pciutils-3.6.4-1.fc33.i686 pciutils-libs-3.6.4-1.fc33.i686 perl-Carp-1.50-440.fc32.noarch perl-Data-Dumper-2.174-443.fc32.i686 perl-Encode-4:3.03-442.fc33.i686 perl-Errno-1.30-450.fc32.i686 perl-Exporter-5.74-2.fc32.noarch perl-File-Path-2.16-440.fc32.noarch perl-File-Temp-1:0.230.900-440.fc32.noarch perl-Getopt-Long-1:2.51-2.fc32.noarch perl-HTTP-Tiny-0.076-440.fc32.noarch perl-IO-1.40-450.fc32.i686 perl-MIME-Base64-3.15-440.fc32.i686 perl-PathTools-3.78-441.fc32.i686 perl-Pod-Escapes-1:1.07-440.fc32.noarch perl-Pod-Perldoc-3.28.01-444.fc33.noarch perl-Pod-Simple-1:3.40-2.fc32.noarch perl-Pod-Usage-4:1.69-440.fc32.noarch perl-Scalar-List-Utils-3:1.54-440.fc32.i686 perl-Socket-4:2.029-5.fc32.i686 perl-Storable-1:3.15-443.fc32.i686 perl-Term-ANSIColor-5.01-2.fc32.noarch perl-Term-Cap-1.17-440.fc32.noarch perl-Text-ParseWords-3.30-440.fc32.noarch perl-Text-Tabs+Wrap-2013.0523-440.fc32.noarch perl-Thread-Queue-3.13-440.fc32.noarch perl-Time-Local-2:1.300-2.fc32.noarch perl-Unicode-Normalize-1.26-440.fc32.i686 perl-constant-1.33-441.fc32.noarch perl-interpreter-4:5.30.1-450.fc32.i686 perl-libs-4:5.30.1-450.fc32.i686 perl-macros-4:5.30.1-450.fc32.i686 perl-parent-1:0.238-1.fc32.noarch perl-podlators-1:4.14-2.fc32.noarch perl-threads-1:2.22-442.fc32.i686 perl-threads-shared-1.60-441.fc32.i686 pmix-3.1.5-1.fc33.i686 procps-ng-3.3.15-7.fc32.i686 python-pip-wheel-19.3.1-2.fc32.noarch python-setuptools-wheel-45.2.0-1.fc33.noarch python3-3.8.2-2.fc33.i686 python3-libs-3.8.2-2.fc33.i686 qrencode-libs-4.0.2-5.fc32.i686 rdma-core-28.0-1.fc33.i686 rdma-core-devel-28.0-1.fc33.i686 rhash-1.3.8-3.fc32.i686 rpm-mpi-hooks-6-5.fc32.noarch sqlite-libs-3.31.1-1.fc32.i686 systemd-245-1.fc33.i686 systemd-pam-245-1.fc33.i686 systemd-rpm-macros-245-1.fc33.noarch systemd-udev-245-1.fc33.i686 tcl-1:8.6.10-1.fc32.i686 tcsh-6.22.02-3.fc32.i686 tng-1.8.2-6.fc32.i686 tng-devel-1.8.2-6.fc32.i686 xorg-x11-proto-devel-2019.1-3.fc32.noarch Complete! Finish: build setup for gromacs-2020.1-1.fc33.src.rpm Start: rpmbuild gromacs-2020.1-1.fc33.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1583193600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.mMaSau + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gromacs-2020.1 + /usr/bin/gzip -dc /builddir/build/SOURCES/gromacs-2020.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2020.1 + /usr/bin/gzip -dc /builddir/build/SOURCES/regressiontests-2020.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (gromacs-dssp-path.patch):' Patch #0 (gromacs-dssp-path.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/gromacs/gmxana/gmx_do_dssp.cpp Hunk #1 succeeded at 473 (offset 28 lines). Hunk #2 succeeded at 607 (offset 17 lines). + install -Dpm644 /builddir/build/SOURCES/manual-2020.1.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/fftpack src/external/tng_io src/external/lmfit + sed -i 's/set(_timeout [0-9]*)/set(_timeout 900)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.WLTuzt + umask 022 + cd /builddir/build/BUILD + cd gromacs-2020.1 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 49 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial ~/build/BUILD/gromacs-2020.1/serial ~/build/BUILD/gromacs-2020.1 + test -z '' + cp -al ../regressiontests-2020.1 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH ++ test -n '' ++ echo -DGMX_X11=ON ++ test '' = openmpi ++ test -n '' ++ echo + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=SSE2 ' ' -DGMX_X11=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib/libX11.so -- Looking for XOpenDisplay in /usr/lib/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2686 v4 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so - not found CMake Warning at cmake/gmxManageFFTLibraries.cmake:190 (message): The fftw library found is compiled without SIMD support, which makes it slow. Consider recompiling it or contact your admin Call Stack (most recent call first): CMakeLists.txt:715 (include) -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/posts/2018/fixing-imagick-error-unauthorized Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pygments' -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "1.6.1") -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/serial + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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-g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/compositesimulatorelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/computeglobalselement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/constraintelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target linearalgebra make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend.internal". Scanning dependencies of target vmddlopen make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/domdechelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/gromacs/fileio/CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/vmd_molfile/vmddlopen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target vmddlopen make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 7%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlgitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/propagator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/shellfcelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/statepropagatordata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/vrescalethermostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Built target modularsimulator make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/any.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security 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src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c 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-mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp 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-isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG 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-isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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-isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/exponentialmovingaverage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/gausstransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/angle_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/binsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/dens_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dyecoupl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_gyrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sans.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/thermochemistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/calch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/fflibutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void read_vsite_database(const char*, std::vector*, std::vector*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp:274:24: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 4094 bytes from a string of length 4094 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genrestr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/insert_molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/crosscorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/autocorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/integrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/expfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/polynomials.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/manyautocorrelation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/abstractdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/analysisdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/dataframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/arraydata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/dataproxy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/datamodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/average.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/datastorage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/displacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/histogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/coordinatefile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadaptercontainer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/outputselector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setprecision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setforces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setstarttime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/settimestep.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setvelocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/requirements.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/freevolume.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/sasa.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/runnercommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/topologyinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/convert_tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/eneconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/pme_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS 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-isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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-g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfitting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c 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-mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security 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81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c 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-mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c 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CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o 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-mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/status.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/session.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/session.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/session.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/version.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/version.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Linking CXX shared library ../../../lib/libgmxapi.so cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgmxapi.so.0 -o ../../../lib/libgmxapi.so.0.1.0 CMakeFiles/gmxapi.dir/context.cpp.o CMakeFiles/gmxapi.dir/exceptions.cpp.o CMakeFiles/gmxapi.dir/gmxapi.cpp.o CMakeFiles/gmxapi.dir/md.cpp.o CMakeFiles/gmxapi.dir/mdmodule.cpp.o CMakeFiles/gmxapi.dir/mdsignals.cpp.o CMakeFiles/gmxapi.dir/session.cpp.o CMakeFiles/gmxapi.dir/status.cpp.o CMakeFiles/gmxapi.dir/system.cpp.o CMakeFiles/gmxapi.dir/version.cpp.o CMakeFiles/gmxapi.dir/workflow.cpp.o CMakeFiles/gmxapi.dir/tpr.cpp.o ../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libgmxapi.so.0.1.0 ../../../lib/libgmxapi.so.0 ../../../lib/libgmxapi.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target gmxapi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p mpich ~/build/BUILD/gromacs-2020.1/mpich ~/build/BUILD/gromacs-2020.1 + pushd mpich + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib/mpich/bin ++ test mpich = openmpi ++ test -n '' ++ echo + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=SSE2 ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib/mpich/bin .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2686 v4 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so - not found CMake Warning at cmake/gmxManageFFTLibraries.cmake:190 (message): The fftw library found is compiled without SIMD support, which makes it slow. Consider recompiling it or contact your admin Call Stack (most recent call first): CMakeLists.txt:715 (include) -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/mpich + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Scanning dependencies of target thread_mpi make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 2%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/constraintelement.cpp make[2]: 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/energyelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/energyelement.cpp make[2]: Leaving 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/signallers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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-isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/vrescalethermostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 5%] Built target modularsimulator make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 5%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS 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-isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcenums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src 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'/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfitting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd 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-c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd 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-c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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CMakeFiles/libgromacs.dir/utility/logger.cpp.o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o CMakeFiles/libgromacs.dir/utility/path.cpp.o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o 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CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o 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CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o selection/CMakeFiles/scanner.dir/parser.cpp.o selection/CMakeFiles/scanner.dir/scanner.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Linking CXX executable ../../bin/mdrun_mpich cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/mdrun_mpich ../../lib/libgromacs_mdrun_mpich.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/mpich/lib/libmpi.so /usr/lib/libfftw3f.so -lopenblas -lpthread -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n mpich + module unload mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi ~/build/BUILD/gromacs-2020.1/openmpi ~/build/BUILD/gromacs-2020.1 + pushd openmpi + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib/openmpi/bin ++ test openmpi = openmpi ++ echo -DMPIEXEC_PREFLAGS=--oversubscribe ++ test -n '' ++ echo + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=SSE2 ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib/openmpi/bin -DMPIEXEC_PREFLAGS=--oversubscribe .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2686 v4 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib/libfftw3f.so - not found CMake Warning at cmake/gmxManageFFTLibraries.cmake:190 (message): The fftw library found is compiled without SIMD support, which makes it slow. Consider recompiling it or contact your admin Call Stack (most recent call first): CMakeLists.txt:715 (include) -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/openmpi + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Scanning dependencies of target thread_mpi make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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-m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall 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src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Built target linearalgebra make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/shellfcelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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-isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=0 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 5%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/any.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection 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src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/exponentialmovingaverage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/gausstransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcenums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c 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-mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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'/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfitting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src 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object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory 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CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src 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src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src 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src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src 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src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o CMakeFiles/libgromacs.dir/utility/any.cpp.o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o CMakeFiles/libgromacs.dir/utility/compare.cpp.o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o CMakeFiles/libgromacs.dir/utility/futil.cpp.o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o CMakeFiles/libgromacs.dir/utility/init.cpp.o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o CMakeFiles/libgromacs.dir/utility/logger.cpp.o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o CMakeFiles/libgromacs.dir/utility/path.cpp.o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o 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CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o CMakeFiles/libgromacs.dir/selection/params.cpp.o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o CMakeFiles/libgromacs.dir/selection/position.cpp.o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o CMakeFiles/libgromacs.dir/selection/selection.cpp.o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o selection/CMakeFiles/scanner.dir/parser.cpp.o selection/CMakeFiles/scanner.dir/scanner.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_openmpi.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Linking CXX executable ../../bin/mdrun_openmpi cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/mdrun_openmpi ../../lib/libgromacs_mdrun_openmpi.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/openmpi/lib/libmpi.so /usr/lib/libfftw3f.so -lopenblas -lpthread -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n openmpi + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ~/build/BUILD/gromacs-2020.1/serial_d ~/build/BUILD/gromacs-2020.1 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d + pushd serial_d + test -z '' + cp -al ../regressiontests-2020.1 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH ++ test -n '' ++ echo -DGMX_X11=ON ++ test '' = openmpi ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=SSE2 ' ' -DGMX_X11=ON -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:213 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib/libX11.so -- Looking for XOpenDisplay in /usr/lib/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2686 v4 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so - not found CMake Warning at cmake/gmxManageFFTLibraries.cmake:190 (message): The fftw library found is compiled without SIMD support, which makes it slow. Consider recompiling it or contact your admin Call Stack (most recent call first): CMakeLists.txt:715 (include) -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/posts/2018/fixing-imagick-error-unauthorized Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'pygments' -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "1.6.1") -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Doxygen not found. Documentation targets will not be generated. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/serial_d + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Scanning dependencies of target thread_mpi make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend.internal". Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/compositesimulatorelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd 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Scanning dependencies of target vmddlopen make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/fileio/CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio && /usr/bin/c++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/vmddlopen.dir/__/__/external/vmd_molfile/vmddlopen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/vmd_molfile/vmddlopen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Built target vmddlopen make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". 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Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic 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src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/nonbonded_bench.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 6%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake" is newer than depender 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-I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 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src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 7%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c 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CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/propagator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/shellfcelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/signallers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory 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CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/statepropagatordata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/any.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c 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-mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c 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src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC 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-isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/angle_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/binsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/dens_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/fitahx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_densmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_dyecoupl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_gyrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sans.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/thermochemistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/calch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/fflibutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void read_vsite_database(const char*, std::vector*, std::vector*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gen_vsite.cpp:274:24: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' output may be truncated copying 4094 bytes from a string of length 4094 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genrestr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/insert_molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tomorse.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/topshake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/xlate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/crosscorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/integrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/statistics/statistics.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/dataframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/datamodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/dataproxy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/datamodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/average.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/displacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/histogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/modules/plot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadaptercontainer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setforces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setprecision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setstarttime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/settimestep.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/outputadapters/setvelocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/requirements.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/freevolume.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/rdf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/sasa.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/runnercommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/eneconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/make_ndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/report_methods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/pme_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tune_pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c 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-mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfitting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c 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selection/CMakeFiles/scanner.dir/scanner.cpp.o /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -ldl -lrt /usr/lib/libfftw3.so -lopenblas -lopenblas -lpthread -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.5.0.0 ../../lib/libgromacs_d.so.5 ../../lib/libgromacs_d.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd 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98%] Built target gmx make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Building CXX object src/api/cpp/CMakeFiles/gmxapi.dir/tpr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -Dgmxapi_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi.dir/tpr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Linking CXX shared library ../../../lib/libgmxapi.so cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgmxapi.so.0 -o ../../../lib/libgmxapi.so.0.1.0 CMakeFiles/gmxapi.dir/context.cpp.o CMakeFiles/gmxapi.dir/exceptions.cpp.o CMakeFiles/gmxapi.dir/gmxapi.cpp.o CMakeFiles/gmxapi.dir/md.cpp.o CMakeFiles/gmxapi.dir/mdmodule.cpp.o CMakeFiles/gmxapi.dir/mdsignals.cpp.o CMakeFiles/gmxapi.dir/session.cpp.o CMakeFiles/gmxapi.dir/status.cpp.o CMakeFiles/gmxapi.dir/system.cpp.o CMakeFiles/gmxapi.dir/version.cpp.o CMakeFiles/gmxapi.dir/workflow.cpp.o CMakeFiles/gmxapi.dir/tpr.cpp.o ../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libgmxapi.so.0.1.0 ../../../lib/libgmxapi.so.0 ../../../lib/libgmxapi.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target gmxapi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p mpich_d ~/build/BUILD/gromacs-2020.1/mpich_d ~/build/BUILD/gromacs-2020.1 + pushd mpich_d + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib/mpich/bin ++ test mpich = openmpi ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=SSE2 ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib/mpich/bin -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:213 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2686 v4 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so - not found CMake Warning at cmake/gmxManageFFTLibraries.cmake:190 (message): The fftw library found is compiled without SIMD support, which makes it slow. Consider recompiling it or contact your admin Call Stack (most recent call first): CMakeLists.txt:715 (include) -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/mpich_d + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/depend.internal". Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Scanning dependencies of target thread_mpi make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Built target thread_mpi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= Dependee 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Scanning dependencies of target linearalgebra make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/parser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend.internal". Scanning dependencies of target modularsimulator make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Built target linearalgebra make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/checkpointhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/compositesimulatorelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/computeglobalselement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/domdechelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/nonbonded_bench.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/forceelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c 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directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/signallers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/topologyholder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/vrescalethermostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Built target modularsimulator make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS 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directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables 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-I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd 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CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src 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directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfittingforce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/densityfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/exponentialmovingaverage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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-I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/gausstransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcenums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcmethods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/dispersioncorrection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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-I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingamplitudelookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src 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'/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoutputprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd 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CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmxfio_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcdensitymapheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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-mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_simple.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd 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CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Linking CXX static library ../../lib/libgromacs_mdrun_mpich_d.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/cmake -P CMakeFiles/libgromacs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libgromacs_mdrun_mpich_d.a CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o CMakeFiles/libgromacs.dir/utility/any.cpp.o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o CMakeFiles/libgromacs.dir/utility/compare.cpp.o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o CMakeFiles/libgromacs.dir/utility/futil.cpp.o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o CMakeFiles/libgromacs.dir/utility/init.cpp.o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o 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CMakeFiles/libgromacs.dir/selection/compiler.cpp.o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o CMakeFiles/libgromacs.dir/selection/params.cpp.o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o CMakeFiles/libgromacs.dir/selection/position.cpp.o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o CMakeFiles/libgromacs.dir/selection/selection.cpp.o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/nrjac.cpp.o linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/system_error.cpp.o selection/CMakeFiles/scanner.dir/parser.cpp.o selection/CMakeFiles/scanner.dir/scanner.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich_d.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Linking CXX executable ../../bin/mdrun_mpich_d cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/mdrun_mpich_d ../../lib/libgromacs_mdrun_mpich_d.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/mpich/lib/libmpi.so /usr/lib/libfftw3.so -lopenblas -lpthread -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n mpich + module unload mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ~/build/BUILD/gromacs-2020.1/openmpi_d ~/build/BUILD/gromacs-2020.1 ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi_d + pushd openmpi_d + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib/openmpi/bin ++ test openmpi = openmpi ++ echo -DMPIEXEC_PREFLAGS=--oversubscribe ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=SSE2 ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib/openmpi/bin -DMPIEXEC_PREFLAGS=--oversubscribe -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 10.0.1 -- The CXX compiler identification is GNU 10.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:213 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /lib/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - Intel -- Detected build CPU brand - Intel(R) Xeon(R) CPU E5-2686 v4 @ 2.30GHz -- Detected build CPU family - 6 -- Detected build CPU model - 79 -- Detected build CPU stepping - 1 -- Detected build CPU features - aes apic avx avx2 clfsh cmov cx8 cx16 f16c fma hle htt intel lahf mmx msr nonstop_tsc pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp rtm sse2 sse3 sse4.1 sse4.2 ssse3 tdt x2apic -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Performing Test C_msse2_FLAG_ACCEPTED -- Performing Test C_msse2_FLAG_ACCEPTED - Success -- Performing Test C_msse2_COMPILE_WORKS -- Performing Test C_msse2_COMPILE_WORKS - Success -- Performing Test CXX_msse2_FLAG_ACCEPTED -- Performing Test CXX_msse2_FLAG_ACCEPTED - Success -- Performing Test CXX_msse2_COMPILE_WORKS -- Performing Test CXX_msse2_COMPILE_WORKS - Success -- Enabling SSE2 SIMD instructions using CXX flags: -msse2 -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/libfftw3.so - not found CMake Warning at cmake/gmxManageFFTLibraries.cmake:190 (message): The fftw library found is compiled without SIMD support, which makes it slow. Consider recompiling it or contact your admin Call Stack (most recent call first): CMakeLists.txt:715 (include) -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_NO_UNUSED_MEMBER_FUNCTION - Success -- Performing Test HAS_NO_REDUNDANT_MOVE -- Performing Test HAS_NO_REDUNDANT_MOVE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test HAS_NO_CLASS_MEMACCESS -- Performing Test HAS_NO_CLASS_MEMACCESS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:303 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2020.1/openmpi_d + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/depend.internal". 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Scanning dependencies of target release-version-info make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/depend.internal". 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Scanning dependencies of target scanner make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Built target release-version-info make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/depend.internal". 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-mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread 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-Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/parser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Building CXX object src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -std=c++14 -o CMakeFiles/scanner.dir/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Built target scanner make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator 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src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -Wno-stringop-truncation -std=c++14 -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Built target linearalgebra make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/computeglobalselement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/constraintelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/nonbonded_bench.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/domdechelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/forceelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/forceelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energyelement.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/freeenergyperturbationelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/freeenergyperturbationelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/propagator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/shellfcelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/shellfcelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/signallers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/modularsimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/statepropagatordata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fopenmp -Wno-redundant-move -std=c++14 -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator/trajectoryelement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 5%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/vrescalethermostat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685919 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/any.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops 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-isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/mpiinplacebuffers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/mpiinplacebuffers.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/gridset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/benchmark/bench_system.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/kernels_simd_4xm/kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/nbnxm_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlistset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/prunekerneldispatch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/nbnxm/pairlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/gpuhaloexchange_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/coordinatetransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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/usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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/usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbc_simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/pbcenums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-class-memaccess -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read_params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/awh/read_params.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/read_params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/conformation_utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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/usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread 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/usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/enerdata_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/energyoutput.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/forcerec.cpp:103:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 103 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_cuda_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/update_constrain_cuda_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables 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Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoutputprovider.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/applied_forces/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/densityfittingoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/gpubonded_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/gpubonded_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/listed_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/manage_threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/position_restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/calculate_spline_moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/ewald_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/long_range_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_load_balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp: In function 'void __static_initialization_and_destruction_0(int, int)': /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_only.cpp:104:16: warning: ignoring return value of 'char* getenv(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 104 | (getenv("GMX_GPU_PME_PP_COMMS") != nullptr) && GMX_THREAD_MPI && (GMX_GPU == GMX_GPU_CUDA); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spline_work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_gpu_program_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_testutils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_testutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd 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/builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/legacysimulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/printtime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c 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-msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidesimulationworkload.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidesimulationworkload.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/communicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/communicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mimic/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/mrcserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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-o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp In file included from /usr/include/string.h:495, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void get_pdb_atomnumber(const t_atoms*, AtomProperties*)' at /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/pdbio.cpp:573:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound 4 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd 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Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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-isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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'/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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/builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic 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Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Linking CXX executable ../../bin/mdrun_openmpi_d cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/mdrun_openmpi_d ../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/openmpi/lib/libmpi.so /usr/lib/libfftw3.so -lopenblas -lpthread -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2020.1 + test -n openmpi + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.lHC3zx + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 ++ dirname /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 + cd gromacs-2020.1 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 24454 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 'INSTALL=/usr/bin/install -p' -C serial make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Built target scanner /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Built target modularsimulator /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 6%] Built target vmddlopen /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/share/template /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/share/template /builddir/build/BUILD/gromacs-2020.1/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Built target template /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Built target view_objlib /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Built target gmx /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[2]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target gmxapi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/man/man1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/man/man1/gmx-rotacf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/man/man1/gmx-wheel.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/man/man1/gmx-gangle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/man/man1/gmx-bundle.1 -- Installing: 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/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/xplor2gmx.pl -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs.so.5.0.0 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs.so.5 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs.so -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/pkgconfig/libgromacs.pc -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gromacs/libgromacs.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gromacs/libgromacs-release.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gromacs/gromacs-config.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gromacs/gromacs-config-version.cmake -- Installing: 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/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/gmx-completion-gmx.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/session.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/status.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/md.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/gmxapi.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/system.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/context.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/md -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/md/mdsignals.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/md/mdmodule.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/gromacsfwd.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/exceptions.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/compat -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/compat/mdparams.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/compat/tpr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/session -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/session/resources.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/gmxapicompat.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgmxapi.so.0.1.0 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgmxapi.so.0 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgmxapi.so -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gmxapi/gmxapi.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gmxapi/gmxapi-release.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gmxapi/gmxapi-config-version.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gmxapi/gmxapi-config.cmake make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 'INSTALL=/usr/bin/install -p' -C mpich make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Built target scanner /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 2%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 5%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/mpich/bin/mdrun_mpich -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/mpich/bin/gmx-completion-mdrun_mpich.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' + test -n mpich + module unload mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 'INSTALL=/usr/bin/install -p' -C openmpi make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Built target scanner /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 5%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/openmpi/bin/mdrun_openmpi -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/openmpi/bin/gmx-completion-mdrun_openmpi.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' + test -n openmpi + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 'INSTALL=/usr/bin/install -p' -C serial_d make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Built target scanner /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 6%] Built target modularsimulator /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 6%] Built target vmddlopen /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/share/template /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/share/template /builddir/build/BUILD/gromacs-2020.1/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target template /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target view_objlib /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target gmx /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[2]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target gmxapi make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: 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Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/tip3p.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/edissoc.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- 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Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a1.ff/methanol.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a1.ff/ions.itp -- Up-to-date: 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Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/top/gromos43a2.ff/ions.itp -- Up-to-date: 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Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/GMXRC -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/GMXRC.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/GMXRC.zsh -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/GMXRC.csh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/demux.pl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/xplor2gmx.pl -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs_d.so.5.0.0 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs_d.so.5 -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs_d.so -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/pkgconfig/libgromacs_d.pc -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gromacs_d/libgromacs.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gromacs_d/libgromacs-release.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gromacs_d/gromacs_d-config.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gromacs_d/gromacs_d-config-version.cmake -- Installing: 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/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/gmx-completion-gmx_d.bash -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/session.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/status.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/md.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/gmxapi.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/system.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/context.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/md -- Up-to-date: 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Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gmxapi/version.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgmxapi.so.0.1.0 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgmxapi.so.0 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgmxapi.so -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gmxapi/gmxapi.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gmxapi/gmxapi-release.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gmxapi/gmxapi-config-version.cmake -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/cmake/gmxapi/gmxapi-config.cmake make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 'INSTALL=/usr/bin/install -p' -C mpich_d make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Built target scanner /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 5%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/mpich/bin/mdrun_mpich_d -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/mpich/bin/gmx-completion-mdrun_mpich_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' + test -n mpich + module unload mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 'INSTALL=/usr/bin/install -p' -C openmpi_d /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Built target scanner /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake -- The source code for this GROMACS installation is different from the officially released version. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Built target release-version-info /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Built target thread_mpi /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Built target linearalgebra /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 5%] Built target modularsimulator /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/math/vectypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/openmpi/bin/mdrun_openmpi_d -- Installing: /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' + test -n openmpi + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/share/doc/gromacs/README.fedora + pushd /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 ~/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 ~/build/BUILD/gromacs-2020.1 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//usr/share/bash-completion/completions + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib/mpich/bin/gmx-completion-mdrun_mpich.bash .//usr/lib/mpich/bin/gmx-completion-mdrun_mpich_d.bash .//usr/lib/openmpi/bin/gmx-completion-mdrun_openmpi.bash .//usr/lib/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2020.1-1.fc33 --unique-debug-suffix -2020.1-1.fc33.i386 --unique-debug-src-base gromacs-2020.1-1.fc33.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2020.1 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/gmx_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/gmx extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/gmx_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/bin/gmx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgmxapi.so.0.1.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgmxapi.so.0.1.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs.so.5.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs.so.5.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs_d.so.5.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/libgromacs_d.so.5.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/mpich/bin/mdrun_mpich extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/mpich/bin/mdrun_mpich explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/mpich/bin/mdrun_mpich_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/mpich/bin/mdrun_mpich_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/openmpi/bin/mdrun_openmpi extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/openmpi/bin/mdrun_openmpi explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/openmpi/bin/mdrun_openmpi_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386/usr/lib/openmpi/bin/mdrun_openmpi_d original debug info size: 1203160kB, size after compression: 881844kB /usr/lib/rpm/sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match. cpio: serial/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/parser.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/parser.y: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory 37370 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.dPyq6v + umask 022 + cd /builddir/build/BUILD + cd gromacs-2020.1 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 25940 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/serial/lib + make -C serial VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles 94 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 0%] Built target scanner [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 2%] Built target thread_mpi make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 3%] Built target linearalgebra make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target modularsimulator make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target vmddlopen make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target release-version-info make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 4%] Built target mdrun_objlib make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 67%] Built target libgromacs make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/CMakeFiles/gmxapi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/CMakeFiles/gmxapi.dir/build.make src/api/cpp/CMakeFiles/gmxapi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'src/api/cpp/CMakeFiles/gmxapi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Built target gmxapi [ 68%] Linking CXX shared library ../../../../../lib/libgtest.so cd /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgtest.so -o ../../../../../lib/libgtest.so CMakeFiles/gtest.dir/src/gtest-all.cc.o -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -D_GNU_SOURCE=1 -Dgmock_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -std=c++14 -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/src/gmock-all.cc [ 68%] Linking CXX shared library ../../../../lib/libgmock.so cd /builddir/build/BUILD/gromacs-2020.1/serial/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgmock.so -o ../../../../lib/libgmock.so CMakeFiles/gmock.dir/src/gmock-all.cc.o -lpthread ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/cmdlinetest.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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CMakeFiles/testutils.dir/testmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testmatchers.cpp [ 69%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testoptions.cpp [ 69%] Building CXX object src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/textblockmatchers.cpp [ 69%] Building CXX object src/testutils/CMakeFiles/testutils.dir/tprfilegenerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include 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[ 69%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/tinyxml2/tinyxml2.cpp [ 69%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi_printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Built target testutils make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/serial 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/mpitest.cpp Scanning dependencies of target mdrun_test_infrastructure make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 69%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/energyreader.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include 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src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/energycomparison.cpp [ 70%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= Dependee 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Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mdmodulenotification.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/terminationhelper.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast 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/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectoryreader.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 70%] Linking CXX static library ../../../../lib/libmdrun_test_infrastructure.a cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o /usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 70%] Built target mdrun_test_infrastructure make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../lib/libgtest.so -lpthread [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 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Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp [ 71%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Built target utility-mpi-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". 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Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 73%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 73%] Built target mdlib-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 74%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 74%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 75%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Built target applied_forces-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp [ 75%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Built target listed_forces-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 75%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Built target onlinehelp-test-shared make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 75%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 75%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Built target domdec-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp [ 75%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Built target utility-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 75%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 76%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 76%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Built target mdrunutility-test-shared make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 77%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 77%] Built target mdspan-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 78%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 79%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Built target math-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 79%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 79%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Built target options-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 80%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 80%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Built target random-test [ 81%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 81%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread [ 81%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Built target taskassignment-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Built target table-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 81%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 81%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp [ 81%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 81%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Built target topology-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 81%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 81%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 82%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 82%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 82%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Built target awh-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 82%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/optional.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 82%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 82%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 82%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Built target compat-test make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Scanning dependencies of target gmxana-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/entropy.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_traj.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_msd.cpp [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 85%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Built target gmxana-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend.internal". Scanning dependencies of target pdb2gmx3-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Built target pdb2gmx3-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend.internal". Scanning dependencies of target pdb2gmx2-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Built target simd-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend.internal". Scanning dependencies of target pdb2gmx1-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Built target pdb2gmx2-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Scanning dependencies of target gmxpreprocess-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/editconf.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=0 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/genconf.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Built target pdb2gmx1-test make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Scanning dependencies of target correlations-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 87%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/genion.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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/usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/expfit.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 88%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Built target correlations-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Scanning dependencies of target analysisdata-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 88%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/datatest.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 88%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/readir.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/topdirs.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Built target gmxpreprocess-test make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend.internal". Scanning dependencies of target coordinateio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/builder.cpp [ 89%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Built target analysisdata-test-shared make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Scanning dependencies of target energyanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 89%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp [ 89%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Built target energyanalysis-test make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Scanning dependencies of target tool-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/dump.cpp [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/outputadapters.cpp [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/report_methods.cpp [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/trjconv.cpp [ 90%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Built target tool-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/confio.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/requirements.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setatoms.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setbothtime.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setstarttime.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/settimestep.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/testmodule.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 91%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Built target coordinateio-test make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Built target fileio-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Scanning dependencies of target mdrun-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/domain_decomposition.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/minimize.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mimic.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/multisim.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/multisimtest.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/replicaexchange.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 91%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Built target mdrun-mpi-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Scanning dependencies of target mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/compressed_x_output.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/densityfittingmodule.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/exactcontinuation.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 91%] Built target selection-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Scanning dependencies of target mdrun-non-integrator-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/minimize.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/grompp.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/helpwriting.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/initialconstraints.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/nonbonded_bench.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/interactiveMD.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/normalmodes.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/outputfiles.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/outputfiles.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/rerun.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/orires.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/simple_mdrun.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/simulator.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 93%] Built target mdrun-non-integrator-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend.internal". Scanning dependencies of target mdrun-tpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/tpitest.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/swapcoords.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 94%] Built target mdrun-tpi-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend.internal". Scanning dependencies of target mdrun-mpi-coordination-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/periodicactions.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/termination.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectory_writing.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mimic.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-mpi-coordination-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 94%] Built target mdrun-mpi-coordination-test make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend.internal". Scanning dependencies of target gmxapi-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/status.cpp make[3]: Leaving directory 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend.internal". Scanning dependencies of target gmxapi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/system.cpp [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/version.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/status.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src 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CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/system.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/runner.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/stopsignaler.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/runner.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/stopsignaler.cpp [ 95%] Linking CXX executable ../../../../bin/gmxapi-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Built target gmxapi-mpi-test make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend.internal". Scanning dependencies of target workflow-details-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests/workflow.cpp [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/gmxapi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Built target gmxapi-test make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend.internal". Scanning dependencies of target workflow-details-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests/workflow.cpp [ 95%] Linking CXX executable ../../../../../bin/workflow-details-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Built target workflow-details-mpi-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 95%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../../bin/workflow-details-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 96%] Built target workflow-details-test [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Built target mdrunutility-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Built target commandline-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Scanning dependencies of target analysisdata-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/analysisdata.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Built target mdrunutility-test make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Scanning dependencies of target trajectoryanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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-mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/arraydata.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/average.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/angle.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/histogram.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/distance.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [100%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/lifetime.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/sasa.cpp [100%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/select.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target analysisdata-test [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2020.1/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target trajectoryanalysis-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/serial Start 1: TestUtilsUnitTests 1/52 Test #1: TestUtilsUnitTests .................. Passed 0.02 sec Start 2: TestUtilsMpiUnitTests 2/52 Test #2: TestUtilsMpiUnitTests ............... Passed 0.01 sec Start 3: UtilityUnitTests 3/52 Test #3: UtilityUnitTests .................... Passed 0.03 sec Start 4: UtilityMpiUnitTests 4/52 Test #4: UtilityMpiUnitTests ................. Passed 0.02 sec Start 5: MdlibUnitTest 5/52 Test #5: MdlibUnitTest ....................... Passed 0.07 sec Start 6: AppliedForcesUnitTest 6/52 Test #6: AppliedForcesUnitTest ............... Passed 0.01 sec Start 7: ListedForcesTest 7/52 Test #7: ListedForcesTest .................... Passed 0.09 sec Start 8: CommandLineUnitTests 8/52 Test #8: CommandLineUnitTests ................ Passed 0.02 sec Start 9: DomDecTests 9/52 Test #9: DomDecTests ......................... Passed 0.01 sec Start 10: EwaldUnitTests 10/52 Test #10: EwaldUnitTests ...................... Passed 0.24 sec Start 11: FFTUnitTests 11/52 Test #11: FFTUnitTests ........................ Passed 0.04 sec Start 12: GpuUtilsUnitTests 12/52 Test #12: GpuUtilsUnitTests ................... Passed 0.01 sec Start 13: HardwareUnitTests 13/52 Test #13: HardwareUnitTests ................... Passed 0.05 sec Start 14: MathUnitTests 14/52 Test #14: MathUnitTests ....................... Passed 0.07 sec Start 15: MdrunUtilityUnitTests 15/52 Test #15: MdrunUtilityUnitTests ............... Passed 0.02 sec Start 16: MdrunUtilityMpiUnitTests 16/52 Test #16: MdrunUtilityMpiUnitTests ............ Passed 1.11 sec Start 17: MDSpanTests 17/52 Test #17: MDSpanTests ......................... Passed 0.01 sec Start 18: OnlineHelpUnitTests 18/52 Test #18: OnlineHelpUnitTests ................. Passed 0.01 sec Start 19: OptionsUnitTests 19/52 Test #19: OptionsUnitTests .................... Passed 0.02 sec Start 20: PbcutilUnitTest 20/52 Test #20: PbcutilUnitTest ..................... Passed 0.01 sec Start 21: RandomUnitTests 21/52 Test #21: RandomUnitTests ..................... Passed 0.03 sec Start 22: RestraintTests 22/52 Test #22: RestraintTests ...................... Passed 0.01 sec Start 23: TableUnitTests 23/52 Test #23: TableUnitTests ...................... Passed 0.11 sec Start 24: TaskAssignmentUnitTests 24/52 Test #24: TaskAssignmentUnitTests ............. Passed 0.01 sec Start 25: TopologyTest 25/52 Test #25: TopologyTest ........................ Passed 0.01 sec Start 26: PullTest 26/52 Test #26: PullTest ............................ Passed 0.01 sec Start 27: AwhTest 27/52 Test #27: AwhTest ............................. Passed 0.02 sec Start 28: SimdUnitTests 28/52 Test #28: SimdUnitTests ....................... Passed 0.08 sec Start 29: CompatibilityHelpersTests 29/52 Test #29: CompatibilityHelpersTests ........... Passed 0.02 sec Start 30: GmxAnaTest 30/52 Test #30: GmxAnaTest .......................... Passed 1.27 sec Start 31: GmxPreprocessTests 31/52 Test #31: GmxPreprocessTests .................. Passed 1.28 sec Start 32: Pdb2gmx1Test 32/52 Test #32: Pdb2gmx1Test ........................ Passed 1.41 sec Start 33: Pdb2gmx2Test 33/52 Test #33: Pdb2gmx2Test ........................ Passed 1.31 sec Start 34: Pdb2gmx3Test 34/52 Test #34: Pdb2gmx3Test ........................ Passed 1.36 sec Start 35: CorrelationsTest 35/52 Test #35: CorrelationsTest .................... Passed 0.04 sec Start 36: AnalysisDataUnitTests 36/52 Test #36: AnalysisDataUnitTests ............... Passed 0.04 sec Start 37: CoordinateIOTests 37/52 Test #37: CoordinateIOTests ................... Passed 0.15 sec Start 38: TrajectoryAnalysisUnitTests 38/52 Test #38: TrajectoryAnalysisUnitTests ......... Passed 1.07 sec Start 39: EnergyAnalysisUnitTests 39/52 Test #39: EnergyAnalysisUnitTests ............. Passed 0.05 sec Start 40: ToolUnitTests 40/52 Test #40: ToolUnitTests ....................... Passed 0.99 sec Start 41: FileIOTests 41/52 Test #41: FileIOTests ......................... Passed 0.02 sec Start 42: SelectionUnitTests 42/52 Test #42: SelectionUnitTests .................. Passed 0.17 sec Start 43: MdrunTests 43/52 Test #43: MdrunTests .......................... Passed 3.10 sec Start 44: MdrunNonIntegratorTests 44/52 Test #44: MdrunNonIntegratorTests ............. Passed 4.41 sec Start 45: MdrunTpiTests 45/52 Test #45: MdrunTpiTests ....................... Passed 0.95 sec Start 46: MdrunMpiTests 46/52 Test #46: MdrunMpiTests ....................... Passed 2.19 sec Start 47: MdrunMpiCoordinationTestsOneRank 47/52 Test #47: MdrunMpiCoordinationTestsOneRank .... Passed 20.69 sec Start 48: MdrunMpiCoordinationTestsTwoRanks 48/52 Test #48: MdrunMpiCoordinationTestsTwoRanks ... Passed 351.84 sec Start 49: GmxapiExternalInterfaceTests 49/52 Test #49: GmxapiExternalInterfaceTests ........ Passed 2.66 sec Start 50: GmxapiMpiTests 50/52 Test #50: GmxapiMpiTests ...................... Passed 2.63 sec Start 51: GmxapiInternalInterfaceTests 51/52 Test #51: GmxapiInternalInterfaceTests ........ Passed 0.85 sec Start 52: GmxapiInternalsMpiTests 52/52 Test #52: GmxapiInternalsMpiTests ............. Passed 0.84 sec 100% tests passed, 0 tests failed out of 52 Label Time Summary: GTest = 401.52 sec*proc (52 tests) IntegrationTest = 18.91 sec*proc (9 tests) MpiTest = 379.34 sec*proc (8 tests) SlowTest = 372.53 sec*proc (2 tests) UnitTest = 10.08 sec*proc (41 tests) Total Test time (real) = 401.56 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/tests /builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/serial/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' cd /builddir/build/BUILD/gromacs-2020.1/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/mpich/lib + make -C mpich VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles 99 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 0%] Built target scanner [ 0%] Generating release version information make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 1%] Built target thread_mpi make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 2%] Built target linearalgebra make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Built target modularsimulator make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 4%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 70%] Built target libgromacs [ 71%] Linking CXX static library ../../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../../lib/libgtest.a CMakeFiles/gtest.dir/src/gtest-all.cc.o /usr/bin/ranlib ../../../../../lib/libgtest.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 71%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -std=c++14 -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/src/gmock-all.cc [ 72%] Linking CXX static library ../../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o /usr/bin/ranlib ../../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 72%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/CMakeFiles/testutils.dir/depend.internal". 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-fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testfilemanager.cpp [ 73%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testfileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe 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-msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testmatchers.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testoptions.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tprfilegenerator.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Built target testutils make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich 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Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem 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'/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 74%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich.a ../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/interactivetest.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich.a ../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 76%] Built target testutils-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 76%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 76%] Built target selection-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Built target mdlib-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Built target applied_forces-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 80%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Built target utility-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 81%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 82%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Built target onlinehelp-test-shared make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 82%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Built target listed_forces-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 83%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 83%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Built target mdrunutility-test-shared make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 83%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 84%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Built target mdspan-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Built target math-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Built target options-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 87%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Built target random-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 88%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 89%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 89%] Built target taskassignment-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 89%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 89%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 89%] Built target table-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 89%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 89%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 90%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp [ 91%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 91%] Built target topology-test [ 91%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 92%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 92%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 92%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 92%] Built target awh-test [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Built target compat-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/confio.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Built target simd-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 96%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 96%] Built target fileio-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 97%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Built target mdrunutility-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 97%] Built target mdrunutility-test [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Built target commandline-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/mpich Start 1: TestUtilsUnitTests 1/31 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec Start 2: TestUtilsMpiUnitTests 2/31 Test #2: TestUtilsMpiUnitTests ............ Passed 0.04 sec Start 3: UtilityUnitTests 3/31 Test #3: UtilityUnitTests ................. Passed 0.04 sec Start 4: UtilityMpiUnitTests 4/31 Test #4: UtilityMpiUnitTests .............. Passed 0.25 sec Start 5: MdlibUnitTest 5/31 Test #5: MdlibUnitTest .................... Passed 0.07 sec Start 6: AppliedForcesUnitTest 6/31 Test #6: AppliedForcesUnitTest ............ Passed 0.02 sec Start 7: ListedForcesTest 7/31 Test #7: ListedForcesTest ................. Passed 0.09 sec Start 8: CommandLineUnitTests 8/31 Test #8: CommandLineUnitTests ............. Passed 0.02 sec Start 9: DomDecTests 9/31 Test #9: DomDecTests ...................... Passed 0.02 sec Start 10: EwaldUnitTests 10/31 Test #10: EwaldUnitTests ................... Passed 0.22 sec Start 11: FFTUnitTests 11/31 Test #11: FFTUnitTests ..................... Passed 0.04 sec Start 12: GpuUtilsUnitTests 12/31 Test #12: GpuUtilsUnitTests ................ Passed 0.02 sec Start 13: HardwareUnitTests 13/31 Test #13: HardwareUnitTests ................ Passed 0.05 sec Start 14: MathUnitTests 14/31 Test #14: MathUnitTests .................... Passed 0.08 sec Start 15: MdrunUtilityUnitTests 15/31 Test #15: MdrunUtilityUnitTests ............ Passed 0.02 sec Start 16: MdrunUtilityMpiUnitTests 16/31 Test #16: MdrunUtilityMpiUnitTests ......... Passed 1.11 sec Start 17: MDSpanTests 17/31 Test #17: MDSpanTests ...................... Passed 0.03 sec Start 18: OnlineHelpUnitTests 18/31 Test #18: OnlineHelpUnitTests .............. Passed 0.02 sec Start 19: OptionsUnitTests 19/31 Test #19: OptionsUnitTests ................. Passed 0.03 sec Start 20: PbcutilUnitTest 20/31 Test #20: PbcutilUnitTest .................. Passed 0.02 sec Start 21: RandomUnitTests 21/31 Test #21: RandomUnitTests .................. Passed 0.03 sec Start 22: RestraintTests 22/31 Test #22: RestraintTests ................... Passed 0.02 sec Start 23: TableUnitTests 23/31 Test #23: TableUnitTests ................... Passed 0.12 sec Start 24: TaskAssignmentUnitTests 24/31 Test #24: TaskAssignmentUnitTests .......... Passed 0.02 sec Start 25: TopologyTest 25/31 Test #25: TopologyTest ..................... Passed 0.02 sec Start 26: PullTest 26/31 Test #26: PullTest ......................... Passed 0.02 sec Start 27: AwhTest 27/31 Test #27: AwhTest .......................... Passed 0.02 sec Start 28: SimdUnitTests 28/31 Test #28: SimdUnitTests .................... Passed 0.08 sec Start 29: CompatibilityHelpersTests 29/31 Test #29: CompatibilityHelpersTests ........ Passed 0.02 sec Start 30: FileIOTests 30/31 Test #30: FileIOTests ...................... Passed 0.02 sec Start 31: SelectionUnitTests 31/31 Test #31: SelectionUnitTests ............... Passed 0.16 sec 100% tests passed, 0 tests failed out of 31 Label Time Summary: GTest = 2.76 sec*proc (31 tests) MpiTest = 1.40 sec*proc (3 tests) UnitTest = 2.76 sec*proc (31 tests) Total Test time (real) = 2.78 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [ 98%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/tests /builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/mpich/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' cd /builddir/build/BUILD/gromacs-2020.1/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich' + test -n mpich + module unload mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvb3Blbm1waS1pMzg2IixbImZ1bGxOYW1lIl09Im1waS9vcGVubXBpLWkzODYiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJtcGkvb3Blbm1waS1pMzg2Iix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFyZS9tb2R1;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/openmpi/lib + make -C openmpi VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles 99 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 0%] Built target scanner [ 0%] Generating release version information make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 1%] Built target thread_mpi make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 2%] Built target linearalgebra make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Built target modularsimulator make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 4%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 70%] Built target libgromacs [ 71%] Linking CXX static library ../../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../../lib/libgtest.a CMakeFiles/gtest.dir/src/gtest-all.cc.o /usr/bin/ranlib ../../../../../lib/libgtest.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 71%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -std=c++14 -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/src/gmock-all.cc [ 72%] Linking CXX static library ../../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o /usr/bin/ranlib ../../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/cmdlinetest.cpp cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem 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-I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testmatchers.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testoptions.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/textblockmatchers.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/tprfilegenerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/xvgtest.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/tinyxml2/tinyxml2.cpp [ 74%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi_printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Built target testutils make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 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src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 74%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" 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-fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi.a ../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/interactivetest.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi.a ../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 76%] Built target testutils-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 76%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 76%] Built target selection-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Built target mdlib-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Built target applied_forces-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 80%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Built target utility-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 81%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 82%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Built target onlinehelp-test-shared make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 82%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Built target listed_forces-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 83%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 83%] Built target ewald-test [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 85%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Built target mdrunutility-test-shared make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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/usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 86%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Built target math-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 86%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 86%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 86%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 86%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 86%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Built target mdspan-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Built target random-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 87%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 88%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Built target options-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 88%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 89%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 89%] Built target taskassignment-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 89%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 89%] Built target table-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 89%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 89%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 90%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 90%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp [ 91%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Built target topology-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 91%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 92%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 92%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Built target awh-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/optional.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Built target compat-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/confio.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 96%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Built target simd-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 96%] Built target fileio-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Built target mdrunutility-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 97%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 97%] Built target mdrunutility-test [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3f.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Built target commandline-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/openmpi Start 1: TestUtilsUnitTests 1/31 Test #1: TestUtilsUnitTests ............... Passed 0.13 sec Start 2: TestUtilsMpiUnitTests 2/31 Test #2: TestUtilsMpiUnitTests ............ Passed 0.13 sec Start 3: UtilityUnitTests 3/31 Test #3: UtilityUnitTests ................. Passed 0.12 sec Start 4: UtilityMpiUnitTests 4/31 Test #4: UtilityMpiUnitTests .............. Passed 0.32 sec Start 5: MdlibUnitTest 5/31 Test #5: MdlibUnitTest .................... Passed 0.17 sec Start 6: AppliedForcesUnitTest 6/31 Test #6: AppliedForcesUnitTest ............ Passed 0.11 sec Start 7: ListedForcesTest 7/31 Test #7: ListedForcesTest ................. Passed 0.18 sec Start 8: CommandLineUnitTests 8/31 Test #8: CommandLineUnitTests ............. Passed 0.12 sec Start 9: DomDecTests 9/31 Test #9: DomDecTests ...................... Passed 0.11 sec Start 10: EwaldUnitTests 10/31 Test #10: EwaldUnitTests ................... Passed 0.32 sec Start 11: FFTUnitTests 11/31 Test #11: FFTUnitTests ..................... Passed 0.13 sec Start 12: GpuUtilsUnitTests 12/31 Test #12: GpuUtilsUnitTests ................ Passed 0.11 sec Start 13: HardwareUnitTests 13/31 Test #13: HardwareUnitTests ................ Passed 0.16 sec Start 14: MathUnitTests 14/31 Test #14: MathUnitTests .................... Passed 0.17 sec Start 15: MdrunUtilityUnitTests 15/31 Test #15: MdrunUtilityUnitTests ............ Passed 0.11 sec Start 16: MdrunUtilityMpiUnitTests 16/31 Test #16: MdrunUtilityMpiUnitTests ......... Passed 0.75 sec Start 17: MDSpanTests 17/31 Test #17: MDSpanTests ...................... Passed 0.11 sec Start 18: OnlineHelpUnitTests 18/31 Test #18: OnlineHelpUnitTests .............. Passed 0.11 sec Start 19: OptionsUnitTests 19/31 Test #19: OptionsUnitTests ................. Passed 0.12 sec Start 20: PbcutilUnitTest 20/31 Test #20: PbcutilUnitTest .................. Passed 0.11 sec Start 21: RandomUnitTests 21/31 Test #21: RandomUnitTests .................. Passed 0.12 sec Start 22: RestraintTests 22/31 Test #22: RestraintTests ................... Passed 0.11 sec Start 23: TableUnitTests 23/31 Test #23: TableUnitTests ................... Passed 0.21 sec Start 24: TaskAssignmentUnitTests 24/31 Test #24: TaskAssignmentUnitTests .......... Passed 0.11 sec Start 25: TopologyTest 25/31 Test #25: TopologyTest ..................... Passed 0.11 sec Start 26: PullTest 26/31 Test #26: PullTest ......................... Passed 0.11 sec Start 27: AwhTest 27/31 Test #27: AwhTest .......................... Passed 0.11 sec Start 28: SimdUnitTests 28/31 Test #28: SimdUnitTests .................... Passed 0.17 sec Start 29: CompatibilityHelpersTests 29/31 Test #29: CompatibilityHelpersTests ........ Passed 0.11 sec Start 30: FileIOTests 30/31 Test #30: FileIOTests ...................... Passed 0.12 sec Start 31: SelectionUnitTests 31/31 Test #31: SelectionUnitTests ............... Passed 0.26 sec 100% tests passed, 0 tests failed out of 31 Label Time Summary: GTest = 5.13 sec*proc (31 tests) MpiTest = 1.20 sec*proc (3 tests) UnitTest = 5.13 sec*proc (31 tests) Total Test time (real) = 5.26 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [ 98%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/tests /builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/openmpi/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' cd /builddir/build/BUILD/gromacs-2020.1/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi' + test -n openmpi + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/serial_d/lib + make -C serial_d VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles 94 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 0%] Built target scanner make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/serial_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 2%] Built target thread_mpi make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 3%] Built target linearalgebra make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Built target modularsimulator make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/CMakeFiles/vmddlopen.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build.make src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'src/gromacs/fileio/CMakeFiles/vmddlopen.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Built target vmddlopen make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgtest_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 4%] Built target release-version-info make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done 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Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_CREATE_SHARED_LIBRARY=1 -D_GNU_SOURCE=1 -Dgmock_EXPORTS -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -std=c++14 -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/src/gmock-all.cc [ 68%] Linking CXX shared library ../../../../lib/libgmock.so cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgmock.so -o ../../../../lib/libgmock.so CMakeFiles/gmock.dir/src/gmock-all.cc.o -lpthread ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". 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Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/cmdlinetest.cpp cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem 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/builddir/build/BUILD/gromacs-2020.1/src/testutils/filematchers.cpp [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/interactivetest.cpp [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/loggertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/loggertest.cpp [ 68%] Building CXX object src/testutils/CMakeFiles/testutils.dir/mpi_printer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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'/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Built target testutils make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem 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src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 69%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/energyreader.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast 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CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 70%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/interactivetest.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/moduletest.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mdmodulenotification.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/terminationhelper.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectorycomparison.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 70%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectoryreader.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 70%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 70%] Linking CXX static library ../../../../lib/libmdrun_test_infrastructure.a cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -P CMakeFiles/mdrun_test_infrastructure.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun_test_infrastructure.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrun_test_infrastructure.a CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/mdmodulenotification.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_infrastructure.dir/trajectoryreader.cpp.o /usr/bin/ranlib ../../../../lib/libmdrun_test_infrastructure.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 70%] Built target mdrun_test_infrastructure make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator_mpi.cpp [ 71%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.5.0.0 ../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Built target testutils-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp [ 71%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 71%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Built target utility-mpi-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/serial_d 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 71%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 72%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 72%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 73%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 74%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Built target mdlib-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 74%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 74%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 74%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 75%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target applied_forces-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp [ 75%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target listed_forces-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 75%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target onlinehelp-test-shared make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 75%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 75%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target domdec-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp [ 75%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target utility-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 75%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 75%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 75%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 76%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 76%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 76%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 76%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 76%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 76%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 76%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 76%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 76%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 76%] Built target mdrunutility-test-shared make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 76%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 76%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 77%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 77%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 77%] Built target mdspan-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 78%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 79%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 79%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 79%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 79%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 79%] Built target math-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 79%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 79%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 79%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 79%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 79%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 80%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Built target options-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 80%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 80%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 80%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 81%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Built target random-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 81%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Built target taskassignment-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 81%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 81%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 81%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Built target table-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 81%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread [ 81%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp [ 81%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Built target topology-test [ 81%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 81%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 81%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 81%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Built target awh-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 81%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/optional.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 82%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 82%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 82%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 82%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Built target compat-test make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Scanning dependencies of target gmxana-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/entropy.cpp [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_traj.cpp [ 84%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 84%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_mindist.cpp [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxana/tests/gmx_msd.cpp [ 85%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 85%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 85%] Built target gmxana-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/depend.internal". Scanning dependencies of target pdb2gmx3-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 85%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=1 -DCHARMM=1 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/pdb2gmx3-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx3-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx3-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 85%] Built target pdb2gmx3-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/depend.internal". Scanning dependencies of target pdb2gmx2-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 85%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 86%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 86%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/pdb2gmx2-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx2-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx2-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Built target pdb2gmx2-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/depend.internal". Scanning dependencies of target pdb2gmx1-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem 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/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Built target simd-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Scanning dependencies of target gmxpreprocess-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/editconf.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/genion.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DAMBER=0 -DCHARMM=0 -DGMX_DOUBLE=1 -DGROMOS=0 -DHAVE_CONFIG_H -DOPLSAA=1 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/gpp_atomtype.cpp [ 87%] Linking CXX executable ../../../../bin/pdb2gmx1-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx1-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx1-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Built target pdb2gmx1-test make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Scanning dependencies of target correlations-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 87%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/gpp_bond_atomtype.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/correlationfunctions/tests/expfit.cpp [ 88%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/insert_molecules.cpp [ 88%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 88%] Built target correlations-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Scanning dependencies of target analysisdata-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 88%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/datatest.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/readir.cpp [ 89%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/mock_datamodule.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gmxpreprocess/tests/topdirs.cpp [ 89%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Built target gmxpreprocess-test make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/depend.internal". Scanning dependencies of target coordinateio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build.make src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/builder.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/builder.cpp [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 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-fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/outputadaptercontainer.cpp [ 89%] Linking CXX static library ../../../../lib/libanalysisdata-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/cmake -P CMakeFiles/analysisdata-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libanalysisdata-test-shared.a CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o /usr/bin/ranlib ../../../../lib/libanalysisdata-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Built target analysisdata-test-shared make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Scanning dependencies of target energyanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 89%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/outputadapters.cpp [ 89%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Built target energyanalysis-test make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Scanning dependencies of target tool-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/dump.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/dump.cpp [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/report_methods.cpp [ 89%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tools/tests/trjconv.cpp [ 90%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tool-test.dir/dump.cpp.o CMakeFiles/tool-test.dir/report_methods.cpp.o CMakeFiles/tool-test.dir/trjconv.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/requirements.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/requirements.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Built target tool-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/confio.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setatoms.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setbothtime.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/setstarttime.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/settimestep.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/coordinateio/tests/testmodule.cpp [ 90%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 90%] Building CXX object src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/coordinateio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/coordinateio-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/coordinateio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/coordinateio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/coordinateio-test.dir/builder.cpp.o CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o CMakeFiles/coordinateio-test.dir/requirements.cpp.o CMakeFiles/coordinateio-test.dir/setatoms.cpp.o CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o CMakeFiles/coordinateio-test.dir/settimestep.cpp.o CMakeFiles/coordinateio-test.dir/testmodule.cpp.o CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/coordinateio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Built target coordinateio-test make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 90%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 91%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 91%] Built target fileio-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Scanning dependencies of target mdrun-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mimic.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/multisim.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/multisimtest.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/replicaexchange.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 91%] Built target mdrun-mpi-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Scanning dependencies of target mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/compressed_x_output.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/densityfittingmodule.cpp [ 91%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/exactcontinuation.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 91%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 ../../../../lib/libgmock.so -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 91%] Built target selection-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Scanning dependencies of target mdrun-non-integrator-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/minimize.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/grompp.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/helpwriting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/helpwriting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/helpwriting.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/nonbonded_bench.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/initialconstraints.cpp [ 92%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/normalmodes.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/interactiveMD.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/rerun.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/outputfiles.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/outputfiles.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/outputfiles.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/orires.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/orires.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/orires.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/pmetest.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/simple_mdrun.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/simulator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/simulator.cpp [ 93%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/nonbonded_bench.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/normalmodes.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/simple_mdrun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 93%] Built target mdrun-non-integrator-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/depend.internal". Scanning dependencies of target mdrun-tpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/tpitest.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/swapcoords.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-tpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-tpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-tpi-test.dir/tpitest.cpp.o CMakeFiles/mdrun-tpi-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-tpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Built target mdrun-tpi-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/depend.internal". Scanning dependencies of target mdrun-mpi-coordination-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/periodicactions.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/termination.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/trajectory_writing.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/programs/mdrun/tests/mimic.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-mpi-coordination-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-coordination-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-coordination-test.dir/periodicactions.cpp.o CMakeFiles/mdrun-mpi-coordination-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-mpi-coordination-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Built target mdrun-mpi-coordination-test make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/depend.internal". Scanning dependencies of target gmxapi-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/restraint.cpp [ 94%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/densityfittingmodule.cpp.o CMakeFiles/mdrun-test.dir/exactcontinuation.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/helpwriting.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/outputfiles.cpp.o CMakeFiles/mdrun-test.dir/orires.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/simulator.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Built target mdrun-test make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend.internal". [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/status.cpp Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/depend.internal". Scanning dependencies of target gmxapi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build.make src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/restraint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/restraint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/restraint.cpp [ 94%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/system.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/status.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/status.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/status.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/version.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/system.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/system.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/system.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/runner.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/version.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include 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src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/runner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src 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CMakeFiles/gmxapi-test.dir/runner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/runner.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/stopsignaler.cpp [ 95%] Building CXX object src/api/cpp/tests/CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/tests/stopsignaler.cpp [ 95%] Linking CXX executable ../../../../bin/gmxapi-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxapi-mpi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-mpi-test.dir/status.cpp.o CMakeFiles/gmxapi-mpi-test.dir/system.cpp.o CMakeFiles/gmxapi-mpi-test.dir/version.cpp.o CMakeFiles/gmxapi-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-mpi-test.dir/runner.cpp.o CMakeFiles/gmxapi-mpi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target gmxapi-mpi-test make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/depend.internal". Scanning dependencies of target workflow-details-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests/workflow.cpp [ 95%] Linking CXX executable ../../../../bin/gmxapi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxapi-test.dir/restraint.cpp.o CMakeFiles/gmxapi-test.dir/status.cpp.o CMakeFiles/gmxapi-test.dir/system.cpp.o CMakeFiles/gmxapi-test.dir/version.cpp.o CMakeFiles/gmxapi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/gmxapi-test.dir/runner.cpp.o CMakeFiles/gmxapi-test.dir/stopsignaler.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../bin/gmxapi-test ../../../../lib/libtestutils.a ../../../../lib/libgmxapi.so.0.1.0 ../../../../lib/libmdrun_test_infrastructure.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target gmxapi-test [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/depend.internal". Scanning dependencies of target workflow-details-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build.make src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/workflow.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/workflow.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/api/cpp/workflow/tests/workflow.cpp [ 95%] Linking CXX executable ../../../../../bin/workflow-details-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/workflow-details-mpi-test.dir/workflow.cpp.o CMakeFiles/workflow-details-mpi-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-mpi-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Built target workflow-details-mpi-test [ 95%] Building CXX object src/api/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/api/cpp/workflow/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/include -I/builddir/build/BUILD/gromacs-2020.1/src/api/cpp -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 95%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 96%] Linking CXX executable ../../../../../bin/workflow-details-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/api/cpp/workflow/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/workflow-details-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/workflow-details-test.dir/workflow.cpp.o CMakeFiles/workflow-details-test.dir/__/__/__/__/testutils/unittest_main.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../../../programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../../../../bin/workflow-details-test ../../../../../lib/libtestutils.a ../../../../../lib/libgmxapi.so.0.1.0 ../../../../../lib/libmdrun_test_infrastructure.a ../../../../../lib/libtestutils.a ../../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../../lib/libgmock.so ../../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 96%] Built target workflow-details-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target mdrunutility-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 98%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target mdrunutility-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Scanning dependencies of target analysisdata-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/analysisdata.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/arraydata.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/average.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/histogram.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/analysisdata/tests/lifetime.cpp [ 98%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target analysisdata-test make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Scanning dependencies of target trajectoryanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [ 98%] Built target commandline-test [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/angle.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/convert_trj.cpp [ 98%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/distance.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/extract_cluster.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/rdf.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/sasa.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/select.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [100%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/serial_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2020.1/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/convert_trj.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/extract_cluster.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libanalysisdata-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.5.0.0 -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so ../../../../lib/libgmock.so ../../../../lib/libgtest.so -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target trajectoryanalysis-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/serial_d Start 1: TestUtilsUnitTests 1/52 Test #1: TestUtilsUnitTests .................. Passed 0.02 sec Start 2: TestUtilsMpiUnitTests 2/52 Test #2: TestUtilsMpiUnitTests ............... Passed 0.01 sec Start 3: UtilityUnitTests 3/52 Test #3: UtilityUnitTests .................... Passed 0.03 sec Start 4: UtilityMpiUnitTests 4/52 Test #4: UtilityMpiUnitTests ................. Passed 0.02 sec Start 5: MdlibUnitTest 5/52 Test #5: MdlibUnitTest ....................... Passed 0.07 sec Start 6: AppliedForcesUnitTest 6/52 Test #6: AppliedForcesUnitTest ............... Passed 0.01 sec Start 7: ListedForcesTest 7/52 Test #7: ListedForcesTest .................... Passed 0.09 sec Start 8: CommandLineUnitTests 8/52 Test #8: CommandLineUnitTests ................ Passed 0.02 sec Start 9: DomDecTests 9/52 Test #9: DomDecTests ......................... Passed 0.01 sec Start 10: EwaldUnitTests 10/52 Test #10: EwaldUnitTests ...................... Passed 0.28 sec Start 11: FFTUnitTests 11/52 Test #11: FFTUnitTests ........................ Passed 0.04 sec Start 12: GpuUtilsUnitTests 12/52 Test #12: GpuUtilsUnitTests ................... Passed 0.02 sec Start 13: HardwareUnitTests 13/52 Test #13: HardwareUnitTests ................... Passed 0.06 sec Start 14: MathUnitTests 14/52 Test #14: MathUnitTests ....................... Passed 0.08 sec Start 15: MdrunUtilityUnitTests 15/52 Test #15: MdrunUtilityUnitTests ............... Passed 0.02 sec Start 16: MdrunUtilityMpiUnitTests 16/52 Test #16: MdrunUtilityMpiUnitTests ............ Passed 1.22 sec Start 17: MDSpanTests 17/52 Test #17: MDSpanTests ......................... Passed 0.01 sec Start 18: OnlineHelpUnitTests 18/52 Test #18: OnlineHelpUnitTests ................. Passed 0.01 sec Start 19: OptionsUnitTests 19/52 Test #19: OptionsUnitTests .................... Passed 0.02 sec Start 20: PbcutilUnitTest 20/52 Test #20: PbcutilUnitTest ..................... Passed 0.01 sec Start 21: RandomUnitTests 21/52 Test #21: RandomUnitTests ..................... Passed 0.02 sec Start 22: RestraintTests 22/52 Test #22: RestraintTests ...................... Passed 0.01 sec Start 23: TableUnitTests 23/52 Test #23: TableUnitTests ...................... Passed 0.36 sec Start 24: TaskAssignmentUnitTests 24/52 Test #24: TaskAssignmentUnitTests ............. Passed 0.01 sec Start 25: TopologyTest 25/52 Test #25: TopologyTest ........................ Passed 0.01 sec Start 26: PullTest 26/52 Test #26: PullTest ............................ Passed 0.01 sec Start 27: AwhTest 27/52 Test #27: AwhTest ............................. Passed 0.02 sec Start 28: SimdUnitTests 28/52 Test #28: SimdUnitTests ....................... Passed 0.12 sec Start 29: CompatibilityHelpersTests 29/52 Test #29: CompatibilityHelpersTests ........... Passed 0.02 sec Start 30: GmxAnaTest 30/52 Test #30: GmxAnaTest .......................... Passed 1.72 sec Start 31: GmxPreprocessTests 31/52 Test #31: GmxPreprocessTests .................. Passed 1.53 sec Start 32: Pdb2gmx1Test 32/52 Test #32: Pdb2gmx1Test ........................ Passed 1.43 sec Start 33: Pdb2gmx2Test 33/52 Test #33: Pdb2gmx2Test ........................ Passed 1.32 sec Start 34: Pdb2gmx3Test 34/52 Test #34: Pdb2gmx3Test ........................ Passed 1.36 sec Start 35: CorrelationsTest 35/52 Test #35: CorrelationsTest .................... Passed 0.05 sec Start 36: AnalysisDataUnitTests 36/52 Test #36: AnalysisDataUnitTests ............... Passed 0.05 sec Start 37: CoordinateIOTests 37/52 Test #37: CoordinateIOTests ................... Passed 0.15 sec Start 38: TrajectoryAnalysisUnitTests 38/52 Test #38: TrajectoryAnalysisUnitTests ......... Passed 1.24 sec Start 39: EnergyAnalysisUnitTests 39/52 Test #39: EnergyAnalysisUnitTests ............. Passed 0.05 sec Start 40: ToolUnitTests 40/52 Test #40: ToolUnitTests ....................... Passed 1.33 sec Start 41: FileIOTests 41/52 Test #41: FileIOTests ......................... Passed 0.02 sec Start 42: SelectionUnitTests 42/52 Test #42: SelectionUnitTests .................. Passed 0.19 sec Start 43: MdrunTests 43/52 Test #43: MdrunTests .......................... Passed 7.52 sec Start 44: MdrunNonIntegratorTests 44/52 Test #44: MdrunNonIntegratorTests ............. Passed 9.11 sec Start 45: MdrunTpiTests 45/52 Test #45: MdrunTpiTests ....................... Passed 1.21 sec Start 46: MdrunMpiTests 46/52 Test #46: MdrunMpiTests ....................... Passed 2.60 sec Start 47: MdrunMpiCoordinationTestsOneRank 47/52 Test #47: MdrunMpiCoordinationTestsOneRank .... Passed 27.88 sec Start 48: MdrunMpiCoordinationTestsTwoRanks 48/52 Test #48: MdrunMpiCoordinationTestsTwoRanks ... Passed 358.71 sec Start 49: GmxapiExternalInterfaceTests 49/52 Test #49: GmxapiExternalInterfaceTests ........ Passed 3.50 sec Start 50: GmxapiMpiTests 50/52 Test #50: GmxapiMpiTests ...................... Passed 3.53 sec Start 51: GmxapiInternalInterfaceTests 51/52 Test #51: GmxapiInternalInterfaceTests ........ Passed 1.15 sec Start 52: GmxapiInternalsMpiTests 52/52 Test #52: GmxapiInternalsMpiTests ............. Passed 1.15 sec 100% tests passed, 0 tests failed out of 52 Label Time Summary: GTest = 429.42 sec*proc (52 tests) IntegrationTest = 31.49 sec*proc (9 tests) MpiTest = 395.12 sec*proc (8 tests) SlowTest = 386.59 sec*proc (2 tests) UnitTest = 11.34 sec*proc (41 tests) Total Test time (real) = 429.47 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/tests /builddir/build/BUILD/gromacs-2020.1/serial_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/serial_d/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' cd /builddir/build/BUILD/gromacs-2020.1/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/serial_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/serial_d' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-i386;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-i386 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/mpich/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/mpich/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/mpich_d/lib + make -C mpich_d VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles 99 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 0%] Built target scanner [ 0%] Generating release version information make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/mpich_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 1%] Built target thread_mpi make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 2%] Built target linearalgebra make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Built target modularsimulator make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/mpich-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 4%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 70%] Built target libgromacs [ 71%] Linking CXX static library ../../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../../lib/libgtest.a CMakeFiles/gtest.dir/src/gtest-all.cc.o /usr/bin/ranlib ../../../../../lib/libgtest.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 71%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". 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-mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testfilemanager.cpp [ 73%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testfileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/testmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/testmatchers.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem 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src/testutils/CMakeFiles/testutils.dir/textblockmatchers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/textblockmatchers.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/tprfilegenerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tprfilegenerator.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/tinyxml2/tinyxml2.cpp [ 74%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi_printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Built target testutils make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/mpitest.cpp Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 74%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 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-mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich_d.a ../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/interactivetest.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem 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CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich_d.a ../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 76%] Built target testutils-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem 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src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 76%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 76%] Built target selection-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 80%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Built target mdlib-test [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 81%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Built target utility-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 81%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 81%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 81%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Built target listed_forces-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 81%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 81%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 82%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Built target onlinehelp-test-shared make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 82%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Built target applied_forces-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 83%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd 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Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 83%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Built target mdrunutility-test-shared make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 83%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 84%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Built target mdspan-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 85%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Built target math-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 87%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Built target options-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 87%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Built target random-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 88%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 89%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 89%] Built target taskassignment-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 89%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 89%] Built target table-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 89%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 90%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 91%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Built target topology-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 91%] Built target pull-test [ 91%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 92%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 92%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 92%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 92%] Built target awh-test [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 92%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -Wno-unused-member-function -o CMakeFiles/compat-test.dir/optional.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/optional.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 94%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Built target compat-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/confio.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 96%] Built target simd-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 96%] Built target fileio-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Built target mdrunutility-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 97%] Built target mdrunutility-test [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/mpich_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/mpich-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GLIBCXX_ASSERTIONS -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a /usr/lib/mpich/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/mpich/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Built target commandline-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/mpich_d Start 1: TestUtilsUnitTests 1/31 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec Start 2: TestUtilsMpiUnitTests 2/31 Test #2: TestUtilsMpiUnitTests ............ Passed 0.23 sec Start 3: UtilityUnitTests 3/31 Test #3: UtilityUnitTests ................. Passed 0.04 sec Start 4: UtilityMpiUnitTests 4/31 Test #4: UtilityMpiUnitTests .............. Passed 0.25 sec Start 5: MdlibUnitTest 5/31 Test #5: MdlibUnitTest .................... Passed 0.08 sec Start 6: AppliedForcesUnitTest 6/31 Test #6: AppliedForcesUnitTest ............ Passed 0.02 sec Start 7: ListedForcesTest 7/31 Test #7: ListedForcesTest ................. Passed 0.09 sec Start 8: CommandLineUnitTests 8/31 Test #8: CommandLineUnitTests ............. Passed 0.02 sec Start 9: DomDecTests 9/31 Test #9: DomDecTests ...................... Passed 0.02 sec Start 10: EwaldUnitTests 10/31 Test #10: EwaldUnitTests ................... Passed 0.26 sec Start 11: FFTUnitTests 11/31 Test #11: FFTUnitTests ..................... Passed 0.04 sec Start 12: GpuUtilsUnitTests 12/31 Test #12: GpuUtilsUnitTests ................ Passed 0.02 sec Start 13: HardwareUnitTests 13/31 Test #13: HardwareUnitTests ................ Passed 0.05 sec Start 14: MathUnitTests 14/31 Test #14: MathUnitTests .................... Passed 0.08 sec Start 15: MdrunUtilityUnitTests 15/31 Test #15: MdrunUtilityUnitTests ............ Passed 0.02 sec Start 16: MdrunUtilityMpiUnitTests 16/31 Test #16: MdrunUtilityMpiUnitTests ......... Passed 1.09 sec Start 17: MDSpanTests 17/31 Test #17: MDSpanTests ...................... Passed 0.03 sec Start 18: OnlineHelpUnitTests 18/31 Test #18: OnlineHelpUnitTests .............. Passed 0.02 sec Start 19: OptionsUnitTests 19/31 Test #19: OptionsUnitTests ................. Passed 0.02 sec Start 20: PbcutilUnitTest 20/31 Test #20: PbcutilUnitTest .................. Passed 0.02 sec Start 21: RandomUnitTests 21/31 Test #21: RandomUnitTests .................. Passed 0.03 sec Start 22: RestraintTests 22/31 Test #22: RestraintTests ................... Passed 0.02 sec Start 23: TableUnitTests 23/31 Test #23: TableUnitTests ................... Passed 0.36 sec Start 24: TaskAssignmentUnitTests 24/31 Test #24: TaskAssignmentUnitTests .......... Passed 0.02 sec Start 25: TopologyTest 25/31 Test #25: TopologyTest ..................... Passed 0.02 sec Start 26: PullTest 26/31 Test #26: PullTest ......................... Passed 0.02 sec Start 27: AwhTest 27/31 Test #27: AwhTest .......................... Passed 0.02 sec Start 28: SimdUnitTests 28/31 Test #28: SimdUnitTests .................... Passed 0.13 sec Start 29: CompatibilityHelpersTests 29/31 Test #29: CompatibilityHelpersTests ........ Passed 0.02 sec Start 30: FileIOTests 30/31 Test #30: FileIOTests ...................... Passed 0.02 sec Start 31: SelectionUnitTests 31/31 Test #31: SelectionUnitTests ............... Passed 0.17 sec 100% tests passed, 0 tests failed out of 31 Label Time Summary: GTest = 3.25 sec*proc (31 tests) MpiTest = 1.57 sec*proc (3 tests) UnitTest = 3.25 sec*proc (31 tests) Total Test time (real) = 3.27 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [ 98%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/tests /builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/mpich_d/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' cd /builddir/build/BUILD/gromacs-2020.1/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/mpich_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/mpich_d' + test -n mpich + module unload mpi/mpich-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-i386 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-i386;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-i386:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-i386;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-i386;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-i386;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-i386;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig:1\;/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-i386 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-i386:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-i386:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-i386 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-i386 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-i386 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-i386 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/openmpi/lib/pkgconfig:1;/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib/openmpi/lib/pkgconfig::/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-i386 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + LD_LIBRARY_PATH=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/lib + make -C openmpi_d VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2020.1 -B/builddir/build/BUILD/gromacs-2020.1/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles 99 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/release-version-info.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/build make -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/selection/CMakeFiles/scanner.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 0%] Generating release version information cd /builddir/build/BUILD/gromacs-2020.1 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3 -D PROJECT_VERSION=2020.1 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2020.1 -D DIRECTORIES_TO_CHECKSUM=/builddir/build/BUILD/gromacs-2020.1/src:/builddir/build/BUILD/gromacs-2020.1/python_packaging -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2020.1/openmpi_d/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /builddir/build/BUILD/gromacs-2020.1/cmake/gmxGenerateVersionInfoRelease.cmake [ 0%] Built target scanner make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/thread_mpi.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 1%] Built target thread_mpi make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 2%] Built target linearalgebra make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build.make src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Built target modularsimulator make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/depend.internal". Scanning dependencies of target gtest make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build.make src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Building CXX object src/external/googletest/googlemock/gtest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest && /usr/bin/c++ -DGMX_DOUBLE=1 -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/openmpi-i386 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=c++14 -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/src/gtest-all.cc -- The source code for this GROMACS installation is different from the officially released version. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 4%] Built target release-version-info make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 70%] Built target libgromacs [ 71%] Linking CXX static library ../../../../../lib/libgtest.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/gtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../../lib/libgtest.a CMakeFiles/gtest.dir/src/gtest-all.cc.o /usr/bin/ranlib ../../../../../lib/libgtest.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 71%] Built target gtest make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock/CMakeFiles/gmock.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/external/googletest/googlemock/CMakeFiles/gmock.dir/build.make src/external/googletest/googlemock/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/external/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock -I/builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wno-deprecated-copy -std=c++14 -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/src/gmock-all.cc [ 72%] Linking CXX static library ../../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/external/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o /usr/bin/ranlib ../../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/cmdlinetest.cpp cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/conftest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/conftest.cpp [ 72%] Building CXX object src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o cd 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/usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/textblockmatchers.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/tprfilegenerator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 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CMakeFiles/testutils.dir/tprfilegenerator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tprfilegenerator.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/xvgtest.cpp [ 74%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/external/tinyxml2/tinyxml2.cpp [ 74%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi_printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata_xml.cpp.o CMakeFiles/testutils.dir/simulationdatabase.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/tprfilegenerator.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Built target testutils make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true 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CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/mpitest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 74%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/indexutil.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 75%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi_d.a ../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem 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/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/nbsearch.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/refdata_tests.cpp [ 75%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/poscalc.cpp [ 75%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/testasserts_tests.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectioncollection.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/tests/xvgtest_tests.cpp [ 76%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/testutils/../external/tinyxml2 -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi_d.a ../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Built target testutils-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem 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/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/alignedallocator.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/selectionoption.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/arrayref.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/selection/tests/toputils.cpp [ 76%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 76%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Built target selection-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constr.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constr.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constr.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestdata.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/constrtestrunners.cpp [ 76%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/ebin.cpp [ 76%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask32.cpp [ 77%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/energyoutput.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/energyoutput.cpp [ 77%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask64.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/bitmask128.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrog.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/cstringutil.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/defaultinitializationallocator.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/enumerationhelpers.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/leapfrogtestrunners.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/fixedcapacityvector.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settle.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/inmemoryserializer.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestdata.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestdata.cpp [ 78%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/settletestrunners.cpp [ 78%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/shake.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/simulationsignal.cpp [ 79%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/logger.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/mutex.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroups.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdlib/tests/updategroupscog.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/path.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/constr.cpp.o CMakeFiles/mdlib-test.dir/constrtestdata.cpp.o CMakeFiles/mdlib-test.dir/constrtestrunners.cpp.o CMakeFiles/mdlib-test.dir/ebin.cpp.o CMakeFiles/mdlib-test.dir/energyoutput.cpp.o CMakeFiles/mdlib-test.dir/leapfrog.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestdata.cpp.o CMakeFiles/mdlib-test.dir/leapfrogtestrunners.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/settletestdata.cpp.o CMakeFiles/mdlib-test.dir/settletestrunners.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/stringutil.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Built target mdlib-test make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/depend.internal". Scanning dependencies of target applied_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build.make src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfitting.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingoptions.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textreader.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/densityfittingamplitudelookup.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/applied_forces/tests/electricfield.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/textwriter.cpp [ 80%] Building CXX object src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/utility/tests/typetraits.cpp [ 80%] Linking CXX executable ../../../../bin/applied_forces-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/applied_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied_forces-test.dir/densityfitting.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingoptions.cpp.o CMakeFiles/applied_forces-test.dir/densityfittingamplitudelookup.cpp.o CMakeFiles/applied_forces-test.dir/electricfield.cpp.o CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 80%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Built target applied_forces-test make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/depend.internal". Scanning dependencies of target listed_forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build.make src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 80%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/listed_forces/tests/bonded.cpp [ 81%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/cstringutil.cpp.o CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o CMakeFiles/utility-test.dir/inmemoryserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Built target utility-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 81%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/mock_helptopic.cpp [ 82%] Linking CXX static library ../../../../lib/libonlinehelp-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -P CMakeFiles/onlinehelp-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libonlinehelp-test-shared.a CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o /usr/bin/ranlib ../../../../lib/libonlinehelp-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Built target onlinehelp-test-shared make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/hashedmap.cpp [ 82%] Building CXX object src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed_forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/listed_forces-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/listed_forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed_forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed_forces-test.dir/bonded.cpp.o CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed_forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/domdec/tests/localatomsetmanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Built target listed_forces-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 82%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fft/tests/fft.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmegathertest.cpp [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/gputest.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/clfftinitializer.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesolvetest.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 83%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/cpuinfo.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/hardware/tests/hardwaretopology.cpp [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/pmetestcommon.cpp [ 83%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 83%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/ewald/tests/testhardwarecontexts.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -std=c++14 -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/coordinatetransformation.cpp [ 83%] Linking CXX static library ../../../../lib/libmdrunutility-test-shared.a cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -P CMakeFiles/mdrunutility-test-shared.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test-shared.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../../lib/libmdrunutility-test-shared.a CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o /usr/bin/ranlib ../../../../lib/libmdrunutility-test-shared.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Built target mdrunutility-test-shared make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/depend.internal". Scanning dependencies of target mdspan-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build.make src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 83%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/accessor_policy.cpp [ 84%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfit.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extents.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extents.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/extensions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/extensions.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/dofit.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/layouts.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/layouts.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/exponentialmovingaverage.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/mdspan.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdspan/tests/mdspan.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/functions.cpp [ 85%] Building CXX object src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/gausstransform.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/gausstransform.cpp [ 85%] Linking CXX executable ../../../../bin/mdspan-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdspan/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdspan-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o CMakeFiles/mdspan-test.dir/extents.cpp.o CMakeFiles/mdspan-test.dir/extensions.cpp.o CMakeFiles/mdspan-test.dir/layouts.cpp.o CMakeFiles/mdspan-test.dir/mdspan.cpp.o CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdspan-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Built target mdspan-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpformat.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/densityfittingforce.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/densityfittingforce.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/invertmatrix.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/abstractoptionstorage.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/matrix.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/multidimarray.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/multidimarray.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/paddedvector.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoption.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/filenameoptionmanager.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/option.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/optionsassigner.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/math/tests/vectypes.cpp [ 86%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/coordinatetransformation.cpp.o CMakeFiles/math-test.dir/densityfit.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/gausstransform.cpp.o CMakeFiles/math-test.dir/densityfittingforce.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/matrix.cpp.o CMakeFiles/math-test.dir/multidimarray.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 86%] Built target math-test make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/depend.internal". Scanning dependencies of target pbcutil-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build.make src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbc.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/repeatingsection.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pbcutil/tests/pbcenums.cpp [ 86%] Building CXX object src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pbcutil/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/pbcutil-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pbcutil/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pbcutil-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pbcutil-test.dir/pbc.cpp.o CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pbcutil-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 86%] Built target pbcutil-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/exponentialdistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/gammadistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/timeunitmanager.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/normaldistribution.cpp [ 86%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/options/tests/treesupport.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/seed.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/threefry.cpp [ 87%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Built target options-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/restraint/tests/manager.cpp [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 87%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/tables/tests/splinetable.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformintdistribution.cpp [ 87%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/random/tests/uniformrealdistribution.cpp [ 88%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Built target random-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 88%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/taskassignment/tests/usergpuids.cpp [ 89%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 89%] Built target taskassignment-test make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/CMakeFiles/topology-test.dir/depend.internal". Scanning dependencies of target topology-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build.make src/gromacs/topology/tests/CMakeFiles/topology-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/exclusionblocks.cpp [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/mtop.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/mtop.cpp [ 89%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/topology/tests/symtab.cpp [ 89%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 89%] Built target table-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 89%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/pulling/tests/pull.cpp [ 90%] Building CXX object src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/topology/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/topology-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/topology/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/topology-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/topology-test.dir/exclusionblocks.cpp.o CMakeFiles/topology-test.dir/mtop.cpp.o CMakeFiles/topology-test.dir/symtab.cpp.o CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/topology-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 90%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Built target topology-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 90%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/bias.cpp [ 91%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Built target pull-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/base.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd.cpp [ 91%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/biasstate.cpp [ 91%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 92%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/awh/tests/grid.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 93%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 93%] Built target awh-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/optional.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem 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-DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_vector_operations.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_math.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/pointers.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/string_view.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/string_view.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/compat/tests/string_view.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_memory.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd_integer.cpp [ 93%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 93%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4.cpp [ 94%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/optional.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/string_view.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_floatingpoint.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Built target compat-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 94%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/confio.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 94%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/simd4_math.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/filemd5.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcserializer.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_util.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymap.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/simd/tests/scalar_math.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/mrcdensitymapheader.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 96%] Built target simd-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd 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-msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/readinp.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/fileioxdrserializer.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/fileio/tests/tngio.cpp [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast 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CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/mrcserializer.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/fileioxdrserializer.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so ../../../../lib/libgtest.a -lpthread /usr/lib/openmpi/lib/libmpi.so [ 96%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && 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-fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 96%] Built target fileio-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests 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Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity_mpi.cpp [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Built target mdrunutility-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 97%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libmdrunutility-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 97%] Built target mdrunutility-test [ 97%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineparser.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/filenm.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/gromacs/commandline/tests/pargs.cpp [ 98%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2020.1/openmpi_d/src -I/builddir/build/BUILD/gromacs-2020.1/src -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/thread_mpi/include -isystem /usr/include/openmpi-i386 -isystem /builddir/build/BUILD/gromacs-2020.1/src/external -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2020.1/src/external/googletest/googletest/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -msse2 -pthread -fexcess-precision=fast -funroll-all-loops -fopenmp -std=c++14 -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2020.1/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/filenm.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libonlinehelp-test-shared.a ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib/libtng_io.so.1.8.2 /lib/libhwloc.so -lrt /usr/lib/libfftw3.so -lopenblas -lm /usr/lib/gcc/i686-redhat-linux/10/libgomp.so /usr/lib/libpthread.so /usr/lib/liblmfit.so /usr/lib/openmpi/lib/libmpi.so ../../../../lib/libgmock.a ../../../../lib/libgtest.a -lpthread make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Built target commandline-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2020.1/openmpi_d Start 1: TestUtilsUnitTests 1/31 Test #1: TestUtilsUnitTests ............... Passed 0.15 sec Start 2: TestUtilsMpiUnitTests 2/31 Test #2: TestUtilsMpiUnitTests ............ Passed 0.13 sec Start 3: UtilityUnitTests 3/31 Test #3: UtilityUnitTests ................. Passed 0.13 sec Start 4: UtilityMpiUnitTests 4/31 Test #4: UtilityMpiUnitTests .............. Passed 0.30 sec Start 5: MdlibUnitTest 5/31 Test #5: MdlibUnitTest .................... Passed 0.17 sec Start 6: AppliedForcesUnitTest 6/31 Test #6: AppliedForcesUnitTest ............ Passed 0.11 sec Start 7: ListedForcesTest 7/31 Test #7: ListedForcesTest ................. Passed 0.18 sec Start 8: CommandLineUnitTests 8/31 Test #8: CommandLineUnitTests ............. Passed 0.11 sec Start 9: DomDecTests 9/31 Test #9: DomDecTests ...................... Passed 0.11 sec Start 10: EwaldUnitTests 10/31 Test #10: EwaldUnitTests ................... Passed 0.35 sec Start 11: FFTUnitTests 11/31 Test #11: FFTUnitTests ..................... Passed 0.13 sec Start 12: GpuUtilsUnitTests 12/31 Test #12: GpuUtilsUnitTests ................ Passed 0.11 sec Start 13: HardwareUnitTests 13/31 Test #13: HardwareUnitTests ................ Passed 0.15 sec Start 14: MathUnitTests 14/31 Test #14: MathUnitTests .................... Passed 0.17 sec Start 15: MdrunUtilityUnitTests 15/31 Test #15: MdrunUtilityUnitTests ............ Passed 0.11 sec Start 16: MdrunUtilityMpiUnitTests 16/31 Test #16: MdrunUtilityMpiUnitTests ......... Passed 0.75 sec Start 17: MDSpanTests 17/31 Test #17: MDSpanTests ...................... Passed 0.11 sec Start 18: OnlineHelpUnitTests 18/31 Test #18: OnlineHelpUnitTests .............. Passed 0.11 sec Start 19: OptionsUnitTests 19/31 Test #19: OptionsUnitTests ................. Passed 0.14 sec Start 20: PbcutilUnitTest 20/31 Test #20: PbcutilUnitTest .................. Passed 0.11 sec Start 21: RandomUnitTests 21/31 Test #21: RandomUnitTests .................. Passed 0.12 sec Start 22: RestraintTests 22/31 Test #22: RestraintTests ................... Passed 0.11 sec Start 23: TableUnitTests 23/31 Test #23: TableUnitTests ................... Passed 0.45 sec Start 24: TaskAssignmentUnitTests 24/31 Test #24: TaskAssignmentUnitTests .......... Passed 0.11 sec Start 25: TopologyTest 25/31 Test #25: TopologyTest ..................... Passed 0.11 sec Start 26: PullTest 26/31 Test #26: PullTest ......................... Passed 0.11 sec Start 27: AwhTest 27/31 Test #27: AwhTest .......................... Passed 0.11 sec Start 28: SimdUnitTests 28/31 Test #28: SimdUnitTests .................... Passed 0.22 sec Start 29: CompatibilityHelpersTests 29/31 Test #29: CompatibilityHelpersTests ........ Passed 0.11 sec Start 30: FileIOTests 30/31 Test #30: FileIOTests ...................... Passed 0.11 sec Start 31: SelectionUnitTests 31/31 Test #31: SelectionUnitTests ............... Passed 0.26 sec 100% tests passed, 0 tests failed out of 31 Label Time Summary: GTest = 5.44 sec*proc (31 tests) MpiTest = 1.18 sec*proc (3 tests) UnitTest = 5.44 sec*proc (31 tests) Total Test time (real) = 5.56 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [ 98%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests /builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' cd /builddir/build/BUILD/gromacs-2020.1/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1 /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2020.1/openmpi_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2020.1/openmpi_d' + test -n openmpi + module unload mpi/openmpi-i386 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-i386 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + RPM_EC=0 ++ jobs -p + exit 0 Processing files: gromacs-2020.1-1.fc33.i686 Provides: gromacs = 2020.1-1.fc33 gromacs(x86-32) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl libX11.so.6 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgromacs.so.5 libgromacs_d.so.5 libm.so.6 libm.so.6(GLIBC_2.0) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) rtld(GNU_HASH) Obsoletes: gromacs-csh < 2016.1-2 gromacs-ngmx < 5.0.4-1 gromacs-zsh < 2016.1-2 Processing files: gromacs-common-2020.1-1.fc33.noarch Provides: gromacs-bash = 2020.1-1.fc33 gromacs-common = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-bash < 5.0.4-1 Processing files: gromacs-doc-2020.1-1.fc33.noarch Provides: gromacs-doc = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-common < 5.0.5-2 Processing files: gromacs-devel-2020.1-1.fc33.i686 Provides: cmake(gmxapi) = 0.1.0 cmake(gromacs) = 2020.1 cmake(gromacs_d) = 2020.1 gromacs-devel = 2020.1-1.fc33 gromacs-devel(x86-32) = 2020.1-1.fc33 pkgconfig(libgromacs) = 2020.1 pkgconfig(libgromacs_d) = 2020.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config cmake-filesystem libgmxapi.so.0 libgromacs.so.5 libgromacs_d.so.5 pkgconfig(fftw3) pkgconfig(fftw3f) Obsoletes: gromacs-mpich-devel < 2016-0.1.20160318gitbec9c87 gromacs-openmpi-devel < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-libs-2020.1-1.fc33.i686 Provides: gromacs-libs = 2020.1-1.fc33 gromacs-libs(x86-32) = 2020.1-1.fc33 libgmxapi.so.0 libgromacs.so.5 libgromacs_d.so.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.27) libc.so.6(GLIBC_2.28) libc.so.6(GLIBC_2.3.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libdl.so.2 libdl.so.2(GLIBC_2.0) libdl.so.2(GLIBC_2.1) libfftw3.so.3 libfftw3f.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_7.0.0) libgcc_s.so.1(GLIBC_2.0) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(GOMP_4.5) libgomp.so.1(OMP_1.0) libgromacs_d.so.5 libhwloc.so.15 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.2) libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) libopenblas.so.0 libpthread.so.0 libpthread.so.0(GLIBC_2.0) libpthread.so.0(GLIBC_2.1) libpthread.so.0(GLIBC_2.3.2) libpthread.so.0(GLIBC_2.3.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.11) libstdc++.so.6(CXXABI_1.3.3) libstdc++.so.6(CXXABI_1.3.5) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.9) libtng_io.so.1 rtld(GNU_HASH) Processing files: gromacs-openmpi-2020.1-1.fc33.i686 Provides: gromacs-openmpi = 2020.1-1.fc33 gromacs-openmpi(x86-32) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.28) libc.so.6(GLIBC_2.3.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libfftw3.so.3 libfftw3f.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_7.0.0) libgcc_s.so.1(GLIBC_2.0) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libhwloc.so.15 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.2) libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) libmpi.so.40(openmpi-i386) libpthread.so.0 libpthread.so.0(GLIBC_2.0) libpthread.so.0(GLIBC_2.1) libpthread.so.0(GLIBC_2.3.2) libpthread.so.0(GLIBC_2.3.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libtng_io.so.1 rtld(GNU_HASH) Obsoletes: gromacs-openmpi-libs < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-mpich-2020.1-1.fc33.i686 Provides: gromacs-mpich = 2020.1-1.fc33 gromacs-mpich(x86-32) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.28) libc.so.6(GLIBC_2.3.2) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libfftw3.so.3 libfftw3f.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_7.0.0) libgcc_s.so.1(GLIBC_2.0) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libhwloc.so.15 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.2) libm.so.6(GLIBC_2.27) libm.so.6(GLIBC_2.29) libmpi.so.12(mpich-i386) libpthread.so.0 libpthread.so.0(GLIBC_2.0) libpthread.so.0(GLIBC_2.1) libpthread.so.0(GLIBC_2.3.2) libpthread.so.0(GLIBC_2.3.4) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.3) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.14) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.18) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libtng_io.so.1 rtld(GNU_HASH) Obsoletes: gromacs-mpich-libs < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-debugsource-2020.1-1.fc33.i686 Provides: gromacs-debugsource = 2020.1-1.fc33 gromacs-debugsource(x86-32) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: gromacs-debuginfo-2020.1-1.fc33.i686 Provides: debuginfo(build-id) = 02b0b18e205a9d9aa299bbcc72cd74c8374d1b96 debuginfo(build-id) = c92551db82adc2b5a72d00bb3ac43cfb65130a33 gromacs-debuginfo = 2020.1-1.fc33 gromacs-debuginfo(x86-32) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(x86-32) = 2020.1-1.fc33 Processing files: gromacs-libs-debuginfo-2020.1-1.fc33.i686 Provides: debuginfo(build-id) = 0af49daab050120237bcadd7098c1c76f9029f03 debuginfo(build-id) = 2252952466154607c36723ff83df94d8a99ac406 debuginfo(build-id) = abdf893938ed28589caef762c32993413612b39e gromacs-libs-debuginfo = 2020.1-1.fc33 gromacs-libs-debuginfo(x86-32) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(x86-32) = 2020.1-1.fc33 Processing files: gromacs-openmpi-debuginfo-2020.1-1.fc33.i686 Provides: debuginfo(build-id) = 29b92150634275e4b20a3259760b672e27464712 debuginfo(build-id) = f7cad83c9c783fa285f9b3b00f837b3d32658a55 gromacs-openmpi-debuginfo = 2020.1-1.fc33 gromacs-openmpi-debuginfo(x86-32) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(x86-32) = 2020.1-1.fc33 Processing files: gromacs-mpich-debuginfo-2020.1-1.fc33.i686 Provides: debuginfo(build-id) = 2eb031d2d4a47e1b9099a158f44974a10e571691 debuginfo(build-id) = bc9e48c9e7260f9de8bb7d57bf8e52b1c85563a9 gromacs-mpich-debuginfo = 2020.1-1.fc33 gromacs-mpich-debuginfo(x86-32) = 2020.1-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(x86-32) = 2020.1-1.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 Wrote: /builddir/build/RPMS/gromacs-2020.1-1.fc33.i686.rpm Wrote: /builddir/build/RPMS/gromacs-common-2020.1-1.fc33.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-devel-2020.1-1.fc33.i686.rpm Wrote: /builddir/build/RPMS/gromacs-doc-2020.1-1.fc33.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-2020.1-1.fc33.i686.rpm Wrote: /builddir/build/RPMS/gromacs-libs-2020.1-1.fc33.i686.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-2020.1-1.fc33.i686.rpm Wrote: /builddir/build/RPMS/gromacs-debugsource-2020.1-1.fc33.i686.rpm Wrote: /builddir/build/RPMS/gromacs-debuginfo-2020.1-1.fc33.i686.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-debuginfo-2020.1-1.fc33.i686.rpm Wrote: /builddir/build/RPMS/gromacs-libs-debuginfo-2020.1-1.fc33.i686.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-debuginfo-2020.1-1.fc33.i686.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.RkKNWt + umask 022 + cd /builddir/build/BUILD + cd gromacs-2020.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/gromacs-2020.1-1.fc33.i386 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild gromacs-2020.1-1.fc33.src.rpm Finish: build phase for gromacs-2020.1-1.fc33.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/1297528-fedora-rawhide-i386-1583623739.679540/root/var/log/dnf.rpm.log /var/lib/mock/1297528-fedora-rawhide-i386-1583623739.679540/root/var/log/dnf.librepo.log /var/lib/mock/1297528-fedora-rawhide-i386-1583623739.679540/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/gromacs-2020.1-1.fc33.src.rpm) Config(child) 198 minutes 19 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run INFO: mock.py version 2.0 starting (python version = 3.7.6)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run Start: scrub ['cache'] INFO: scrubbing cache for child Finish: scrub ['cache'] Finish: run